Variant report

Variant	rs32918
Chromosome Location	chr5:94304991-94304992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:94304130..94305536-chr5:94574079..94575324,9	MCF-7	breast:
2	chr5:94304630..94305536-chr5:94573229..94573783,2	MCF-7	breast:
3	chr5:94304278..94305242-chr5:94513426..94514092,2	MCF-7	breast:
4	chr5:94303787..94305538-chr5:94574100..94575359,14	MCF-7	breast:
5	chr5:94303824..94305467-chr5:94596777..94598299,13	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs152279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs159012	0.87[ASN][1000 genomes]
rs159016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159019	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs159021	0.88[EUR][1000 genomes]
rs159023	0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs168708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17084352	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs293041	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs293042	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs293043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs293045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs32919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs32920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39624	1.00[CEU][hapmap]
rs456156	0.85[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs463416	0.85[CHB][hapmap];0.90[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs464308	1.00[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs464450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs465671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs465714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs467322	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72777354	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs816871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs816873	0.85[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94301200-94311000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:94301200-94337600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:94301600-94310800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:94301800-94310800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:94304000-94305000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr5:94304400-94305000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:94304400-94305400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:94304400-94305400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr5:94304400-94305400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:94304600-94305200	Weak transcription	Brain Anterior Caudate	brain
11	chr5:94304600-94305400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr5:94304600-94305400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr5:94304600-94310800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr5:94304800-94305400	Enhancers	HUVEC	blood vessel

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