Variant report

Variant	rs1592484
Chromosome Location	chr16:52091849-52091850
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11076316	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11076320	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12596240	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12599241	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1582316	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1582318	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1582321	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1582327	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1592481	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1592483	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1600002	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1600003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1861324	0.84[ASN][1000 genomes]
rs1861325	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1861326	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1861327	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1861328	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2059233	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2194289	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2194291	0.95[ASN][1000 genomes]
rs2216741	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33363	0.82[ASN][1000 genomes]
rs33364	0.82[ASN][1000 genomes]
rs3743794	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv827650	chr16:52067728-52124369	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52090600-52092600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr16:52091200-52093000	Enhancers	Fetal Stomach	stomach
3	chr16:52091600-52092200	Enhancers	Colon Smooth Muscle	Colon

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