Variant report

Variant	rs1582327
Chromosome Location	chr16:52124643-52124644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11076316	0.82[ASN][1000 genomes]
rs11076320	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12444436	0.97[EUR][1000 genomes]
rs12596240	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12599241	0.83[ASN][1000 genomes]
rs1582316	0.86[ASN][1000 genomes]
rs1582318	0.86[ASN][1000 genomes]
rs1582321	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1582322	0.97[EUR][1000 genomes]
rs1582323	0.97[EUR][1000 genomes]
rs1582325	0.97[EUR][1000 genomes]
rs1582326	0.85[ASN][1000 genomes]
rs1592481	0.86[ASN][1000 genomes]
rs1592483	0.82[ASN][1000 genomes]
rs1592484	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1592488	0.91[EUR][1000 genomes]
rs1600002	0.86[ASN][1000 genomes]
rs1600003	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1861323	0.80[ASN][1000 genomes]
rs1861324	0.93[ASN][1000 genomes]
rs1861325	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1861326	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1861327	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1861328	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2059233	0.86[ASN][1000 genomes]
rs2194291	0.86[ASN][1000 genomes]
rs2216741	0.82[ASN][1000 genomes]
rs33362	0.80[ASN][1000 genomes]
rs3743794	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs42771	0.80[ASN][1000 genomes]
rs9635511	0.97[EUR][1000 genomes]
rs9652633	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1058257	chr16:52093549-52271815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52123800-52124800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr16:52123800-52124800	Enhancers	NHEK	skin
3	chr16:52123800-52125000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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