Variant report

Variant	rs3743794
Chromosome Location	chr16:52112312-52112313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-152O14.5.1-1	chr16:52112309-52112444	XLOC_011940
2	lnc-RP11-152O14.5.1-1	chr16:52112309-52112402	XLOC_011940
3	lnc-RP11-152O14.5.1-1	chr16:52112309-52112402	XLOC_011940
4	lnc-RP11-152O14.5.1-1	chr16:52112309-52112444	XLOC_011940
5	lnc-RP11-152O14.5.1-1	chr16:52112309-52112444	XLOC_011940
6	lnc-RP11-152O14.5.1-1	chr16:52112309-52112386	NONHSAT142491

No data

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11076316	0.86[ASN][1000 genomes]
rs11076320	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12444436	0.97[EUR][1000 genomes]
rs12596240	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12599241	0.83[ASN][1000 genomes]
rs1582316	0.86[ASN][1000 genomes]
rs1582318	0.86[ASN][1000 genomes]
rs1582321	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1582322	0.96[EUR][1000 genomes]
rs1582323	0.97[EUR][1000 genomes]
rs1582325	0.97[EUR][1000 genomes]
rs1582326	0.86[CHD][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs1582327	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1592481	0.86[ASN][1000 genomes]
rs1592483	0.86[ASN][1000 genomes]
rs1592484	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1592487	0.80[ASN][1000 genomes]
rs1592488	0.91[EUR][1000 genomes]
rs1600002	0.86[ASN][1000 genomes]
rs1600003	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1861323	0.85[ASN][1000 genomes]
rs1861324	0.98[ASN][1000 genomes]
rs1861325	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1861326	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1861327	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1861328	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2059233	0.86[ASN][1000 genomes]
rs2194291	0.86[ASN][1000 genomes]
rs2216741	0.86[ASN][1000 genomes]
rs256591	0.80[ASN][1000 genomes]
rs33362	0.80[ASN][1000 genomes]
rs42771	0.85[ASN][1000 genomes]
rs9635511	1.00[CEU][hapmap];0.81[GIH][hapmap];0.91[TSI][hapmap];0.97[EUR][1000 genomes]
rs9652633	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv827650	chr16:52067728-52124369	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1058257	chr16:52093549-52271815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52103000-52112600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr16:52104200-52112600	Weak transcription	Brain Angular Gyrus	brain
3	chr16:52104200-52112600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr16:52110000-52114400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr16:52111000-52112600	Weak transcription	Brain Substantia Nigra	brain
6	chr16:52111000-52113000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr16:52111400-52112400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr16:52111600-52113800	Enhancers	Brain Cingulate Gyrus	brain
9	chr16:52112000-52112400	Weak transcription	Brain Hippocampus Middle	brain

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