Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11076320	0.98[EUR][1000 genomes]
rs12444436	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12445989	0.81[ASN][1000 genomes]
rs12596240	0.99[EUR][1000 genomes]
rs12932897	0.81[ASN][1000 genomes]
rs1582318	0.81[EUR][1000 genomes]
rs1582321	0.99[EUR][1000 genomes]
rs1582322	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1582323	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1582327	0.97[EUR][1000 genomes]
rs1592481	0.81[EUR][1000 genomes]
rs1592488	0.93[EUR][1000 genomes]
rs1600002	0.81[EUR][1000 genomes]
rs17201148	0.81[ASN][1000 genomes]
rs1861325	0.99[EUR][1000 genomes]
rs1861326	0.97[EUR][1000 genomes]
rs1861327	0.98[EUR][1000 genomes]
rs1861328	0.98[EUR][1000 genomes]
rs2059233	0.81[EUR][1000 genomes]
rs2386570	0.81[ASN][1000 genomes]
rs3743794	0.97[EUR][1000 genomes]
rs3848309	0.81[ASN][1000 genomes]
rs3848310	0.81[ASN][1000 genomes]
rs4785068	0.81[ASN][1000 genomes]
rs9635511	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv827650	chr16:52067728-52124369	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1058257	chr16:52093549-52271815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52120800-52122200	Weak transcription	Fetal Brain Male	brain

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