Variant report

Variant	rs2386570
Chromosome Location	chr16:52132548-52132549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

No data

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHD9-7	chr16:52132212-52132980	XLOC_011723
2	lnc-CHD9-7	chr16:52132212-52132980	XLOC_011723
3	lnc-CHD9-7	chr16:52132212-52132980	XLOC_011723
4	lnc-CHD9-7	chr16:52132212-52132980	XLOC_011723
5	lnc-CHD9-7	chr16:52132212-52132979	ENSG00000261749.2
6	lnc-CHD9-7	chr16:52132211-52132980	NONHSAT142498
7	lnc-CHD9-7	chr16:52132212-52132979	NONHSAT142509
8	lnc-CHD9-7	chr16:52132212-52132979	NR_104655

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12444106	0.88[EUR][1000 genomes]
rs12445989	1.00[ASN][1000 genomes]
rs12932897	1.00[ASN][1000 genomes]
rs1362421	0.88[EUR][1000 genomes]
rs1468805	0.96[ASN][1000 genomes]
rs1582325	0.81[ASN][1000 genomes]
rs1582326	0.81[TSI][hapmap]
rs17201148	1.00[ASN][1000 genomes]
rs33335	0.96[EUR][1000 genomes]
rs3848309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3848310	1.00[ASN][1000 genomes]
rs3859114	0.88[EUR][1000 genomes]
rs40017	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4785068	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62039866	0.84[ASN][1000 genomes]
rs62039868	0.81[ASN][1000 genomes]
rs62039870	0.81[ASN][1000 genomes]
rs62039871	0.88[EUR][1000 genomes]
rs9635511	1.00[CHB][hapmap];0.96[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1058257	chr16:52093549-52271815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52130000-52132800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr16:52132000-52132600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr16:52132200-52137200	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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