Variant report

Variant	rs62039866
Chromosome Location	chr16:52146454-52146455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12444106	0.87[ASN][1000 genomes]
rs12445989	0.84[ASN][1000 genomes]
rs12932897	0.84[ASN][1000 genomes]
rs1362421	0.87[ASN][1000 genomes]
rs1468805	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17201148	0.84[ASN][1000 genomes]
rs2386570	0.84[ASN][1000 genomes]
rs33335	0.85[ASN][1000 genomes]
rs33336	0.85[ASN][1000 genomes]
rs3848309	0.84[ASN][1000 genomes]
rs3848310	0.84[ASN][1000 genomes]
rs3859114	0.91[ASN][1000 genomes]
rs40017	0.88[ASN][1000 genomes]
rs4785068	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62039868	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62039870	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62039871	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1058257	chr16:52093549-52271815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52146000-52147800	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr16:52146200-52147000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr16:52146200-52148000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr16:52146400-52149000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr16:52146400-52149000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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