Variant report
Variant | rs40017 |
---|---|
Chromosome Location | chr16:52129504-52129505 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs11640171 | 0.82[ASN][1000 genomes] |
rs12444106 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12445989 | 0.81[ASN][1000 genomes] |
rs12932897 | 0.81[ASN][1000 genomes] |
rs1362421 | 0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs17201148 | 0.81[ASN][1000 genomes] |
rs2386570 | 0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs33335 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs33336 | 0.84[AFR][1000 genomes];0.97[ASN][1000 genomes] |
rs3848309 | 0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs3848310 | 0.81[ASN][1000 genomes] |
rs3859114 | 0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4785068 | 0.81[ASN][1000 genomes] |
rs62039866 | 0.88[ASN][1000 genomes] |
rs62039868 | 0.85[ASN][1000 genomes] |
rs62039870 | 0.85[ASN][1000 genomes] |
rs62039871 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv492248 | chr16:51681902-52456082 | Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
2 | esv34024 | chr16:51878565-52316530 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
3 | nsv1058257 | chr16:52093549-52271815 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:52128000-52129800 | Enhancers | Fetal Kidney | kidney |