Variant report

Variant	rs62039870
Chromosome Location	chr16:52162329-52162330
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11640171	0.83[ASN][1000 genomes]
rs12444106	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12445989	0.81[ASN][1000 genomes]
rs12932897	0.81[ASN][1000 genomes]
rs1362421	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1468805	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17201148	0.81[ASN][1000 genomes]
rs2386570	0.81[ASN][1000 genomes]
rs33335	0.82[ASN][1000 genomes]
rs33336	0.82[ASN][1000 genomes]
rs3848309	0.81[ASN][1000 genomes]
rs3848310	0.81[ASN][1000 genomes]
rs3859114	0.88[ASN][1000 genomes]
rs40017	0.85[ASN][1000 genomes]
rs4785068	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62039866	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62039868	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62039871	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1058257	chr16:52093549-52271815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52161800-52162600	Enhancers	Brain Cingulate Gyrus	brain
2	chr16:52162200-52162400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr16:52162200-52162400	Enhancers	Brain Substantia Nigra	brain
4	chr16:52162200-52162600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr16:52162200-52162800	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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