Variant report

Variant	rs256591
Chromosome Location	chr16:52100520-52100521
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1102396	0.85[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes]
rs11076320	0.85[ASN][1000 genomes]
rs12596240	0.80[ASN][1000 genomes]
rs1582321	0.85[ASN][1000 genomes]
rs1582326	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1592487	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1861323	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1861324	1.00[EUR][1000 genomes]
rs1861325	0.80[ASN][1000 genomes]
rs1861326	0.80[ASN][1000 genomes]
rs1861328	0.85[ASN][1000 genomes]
rs33336	0.87[EUR][1000 genomes]
rs33362	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs33363	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs33364	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3743794	0.80[ASN][1000 genomes]
rs42771	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72797914	0.84[AMR][1000 genomes]
rs9652633	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv827650	chr16:52067728-52124369	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1058257	chr16:52093549-52271815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52097800-52101200	Weak transcription	Brain Hippocampus Middle	brain
2	chr16:52098200-52101200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr16:52100400-52101400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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