Variant report
| Variant | rs1593149 |
|---|---|
| Chromosome Location | chr16:59298158-59298159 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1002505 | 0.84[EUR][1000 genomes] |
| rs1022099 | 0.86[EUR][1000 genomes] |
| rs10431930 | 0.86[EUR][1000 genomes] |
| rs12447529 | 0.88[EUR][1000 genomes] |
| rs12921678 | 0.89[EUR][1000 genomes] |
| rs12928697 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12929739 | 0.89[EUR][1000 genomes] |
| rs1303842 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1593148 | 0.88[EUR][1000 genomes] |
| rs1593151 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1820258 | 0.84[EUR][1000 genomes] |
| rs1834064 | 0.85[EUR][1000 genomes] |
| rs2036807 | 0.88[EUR][1000 genomes] |
| rs2081226 | 0.86[EUR][1000 genomes] |
| rs2081227 | 0.86[EUR][1000 genomes] |
| rs2098731 | 0.86[EUR][1000 genomes] |
| rs2406766 | 0.88[EUR][1000 genomes] |
| rs4784075 | 0.81[EUR][1000 genomes] |
| rs4784076 | 0.86[EUR][1000 genomes] |
| rs4785030 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6500029 | 0.88[EUR][1000 genomes] |
| rs6500033 | 0.80[EUR][1000 genomes] |
| rs7189911 | 0.81[CEU][hapmap] |
| rs7195264 | 0.86[EUR][1000 genomes] |
| rs7198887 | 0.81[EUR][1000 genomes] |
| rs7202206 | 0.80[EUR][1000 genomes] |
| rs7204255 | 0.80[EUR][1000 genomes] |
| rs8056029 | 0.86[EUR][1000 genomes] |
| rs907053 | 0.88[EUR][1000 genomes] |
| rs9708808 | 0.84[EUR][1000 genomes] |
| rs995663 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833249 | chr16:59282950-59461023 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1593149 | NUDT21 | cis | parietal | SCAN |
| rs1593149 | MT1F | cis | cerebellum | SCAN |
| rs1593149 | CES7 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:59297400-59299800 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
