Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1002505	0.84[EUR][1000 genomes]
rs1022099	0.86[EUR][1000 genomes]
rs10431930	0.86[EUR][1000 genomes]
rs12447529	0.88[EUR][1000 genomes]
rs12921678	0.89[EUR][1000 genomes]
rs12928697	0.86[EUR][1000 genomes]
rs12929739	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1303842	0.87[EUR][1000 genomes]
rs1593148	0.88[EUR][1000 genomes]
rs1593149	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1820258	0.84[EUR][1000 genomes]
rs1834064	0.85[EUR][1000 genomes]
rs2036807	0.88[EUR][1000 genomes]
rs2081226	0.86[EUR][1000 genomes]
rs2081227	0.86[EUR][1000 genomes]
rs2098731	0.86[EUR][1000 genomes]
rs2406766	0.88[EUR][1000 genomes]
rs4784075	0.81[EUR][1000 genomes]
rs4784076	0.86[EUR][1000 genomes]
rs4785030	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6500029	0.88[EUR][1000 genomes]
rs6500033	0.80[EUR][1000 genomes]
rs7195264	0.86[EUR][1000 genomes]
rs7198887	0.81[EUR][1000 genomes]
rs7202206	0.80[EUR][1000 genomes]
rs7204255	0.80[EUR][1000 genomes]
rs8056029	0.86[EUR][1000 genomes]
rs907053	0.88[EUR][1000 genomes]
rs9708808	0.84[EUR][1000 genomes]
rs995663	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59292000-59294200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr16:59292200-59294600	Enhancers	Dnd41	blood
3	chr16:59292600-59293800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr16:59292800-59294600	Enhancers	Primary hematopoietic stem cells	blood
5	chr16:59292800-59294600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr16:59293000-59293800	Flanking Active TSS	Primary T cells from cord blood	blood
7	chr16:59293000-59294200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr16:59293000-59294600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr16:59293200-59294600	Enhancers	Fetal Thymus	thymus
10	chr16:59293200-59294600	Enhancers	HSMM	muscle
11	chr16:59293200-59294600	Enhancers	HSMMtube	muscle
12	chr16:59293400-59293800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
13	chr16:59293400-59293800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr16:59293600-59293800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr16:59293600-59294600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr16:59293600-59294600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr16:59293600-59294600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr16:59293600-59295200	Enhancers	Primary T helper cells PMA-I stimulated	--

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