Variant report

Variant	rs2406766
Chromosome Location	chr16:59292943-59292944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1000100	0.84[EUR][1000 genomes]
rs1000102	0.84[EUR][1000 genomes]
rs1019571	0.86[EUR][1000 genomes]
rs1027913	0.87[EUR][1000 genomes]
rs12447529	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12709025	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12925044	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12929739	0.81[EUR][1000 genomes]
rs1582588	0.86[EUR][1000 genomes]
rs1593112	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1593146	0.84[EUR][1000 genomes]
rs1593148	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1593149	0.88[EUR][1000 genomes]
rs1593151	0.88[EUR][1000 genomes]
rs1610077	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1813437	0.82[EUR][1000 genomes]
rs1834058	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1834059	0.83[EUR][1000 genomes]
rs1834064	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2036805	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2036806	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2089727	0.80[EUR][1000 genomes]
rs2406779	0.87[EUR][1000 genomes]
rs3958621	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4146209	0.87[EUR][1000 genomes]
rs4494528	0.83[EUR][1000 genomes]
rs4785028	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4785029	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6500029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6500031	0.86[EUR][1000 genomes]
rs7198374	0.86[EUR][1000 genomes]
rs7198887	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7201230	0.87[EUR][1000 genomes]
rs7202693	0.86[EUR][1000 genomes]
rs7204255	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8043584	0.88[EUR][1000 genomes]
rs907053	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9927205	0.87[EUR][1000 genomes]
rs9927985	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9940394	0.84[EUR][1000 genomes]
rs995663	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833247	chr16:59132198-59293527	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59291400-59293000	Enhancers	Primary T cells from cord blood	blood
2	chr16:59292000-59294200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr16:59292200-59294600	Enhancers	Dnd41	blood
4	chr16:59292600-59293200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr16:59292600-59293400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr16:59292600-59293800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr16:59292800-59293000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr16:59292800-59293200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr16:59292800-59293600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr16:59292800-59294600	Enhancers	Primary hematopoietic stem cells	blood
11	chr16:59292800-59294600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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