Variant report

Variant	rs1602631
Chromosome Location	chr3:138985300-138985301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10212419	1.00[ASW][hapmap]
rs11921822	0.95[ASN][1000 genomes]
rs1602630	0.95[ASN][1000 genomes]
rs1948400	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439841	0.93[ASN][1000 genomes]
rs6439842	0.95[ASN][1000 genomes]
rs6439843	0.94[ASN][1000 genomes]
rs6439844	0.95[ASN][1000 genomes]
rs7635629	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9826305	0.83[ASN][1000 genomes]
rs9839624	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1602631	FOXL2	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138979400-138985400	Weak transcription	Pancreas	Pancrea
2	chr3:138979800-138985600	Weak transcription	Right Ventricle	heart
3	chr3:138980000-138985800	Weak transcription	Spleen	Spleen
4	chr3:138984400-138986000	Weak transcription	Left Ventricle	heart
5	chr3:138984400-138986000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:138984600-138986200	Weak transcription	Brain Anterior Caudate	brain
7	chr3:138984800-138986200	Weak transcription	Ovary	ovary
8	chr3:138985200-138988200	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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