Variant report

Variant	rs1948400
Chromosome Location	chr3:138984246-138984247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11921822	0.95[ASN][1000 genomes]
rs1602630	0.95[ASN][1000 genomes]
rs1602631	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439841	0.93[ASN][1000 genomes]
rs6439842	0.95[ASN][1000 genomes]
rs6439843	0.94[ASN][1000 genomes]
rs6439844	0.95[ASN][1000 genomes]
rs7635629	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9826305	0.83[ASN][1000 genomes]
rs9839624	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138979400-138985400	Weak transcription	Pancreas	Pancrea
2	chr3:138979800-138985600	Weak transcription	Right Ventricle	heart
3	chr3:138980000-138985800	Weak transcription	Spleen	Spleen
4	chr3:138983400-138984800	Strong transcription	Ovary	ovary
5	chr3:138984000-138984400	Enhancers	Left Ventricle	heart
6	chr3:138984000-138984400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr3:138984200-138984400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:138984200-138984600	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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