Variant report

Variant	rs7635629
Chromosome Location	chr3:138978980-138978981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138939169..138941125-chr3:138976594..138979201,2	MCF-7	breast:
2	chr3:138978048..138980422-chr3:138985255..138986781,2	K562	blood:
3	chr3:138972220..138975029-chr3:138977276..138980675,3	MCF-7	breast:
4	chr3:138975901..138977496-chr3:138977709..138980522,2	K562	blood:
5	chr3:138972800..138975345-chr3:138978685..138981269,2	K562	blood:
6	chr3:138977971..138979750-chr3:138999582..139001642,2	K562	blood:
7	chr3:138978224..138980066-chr3:138982518..138984741,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C3orf72-7	chr3:138978965-138979322	l_2483_chr3:138972836-138979311_testes

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11921822	0.92[ASN][1000 genomes]
rs1602630	0.92[ASN][1000 genomes]
rs1602631	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1948400	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6439841	0.94[ASN][1000 genomes]
rs6439842	0.92[ASN][1000 genomes]
rs6439843	0.91[ASN][1000 genomes]
rs6439844	0.92[ASN][1000 genomes]
rs9826305	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9839624	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138978200-138979200	Weak transcription	Right Ventricle	heart
2	chr3:138978600-138980800	Enhancers	Ovary	ovary
3	chr3:138978800-138979400	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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