Variant report

Variant	rs9839624
Chromosome Location	chr3:138977932-138977933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138939169..138941125-chr3:138976594..138979201,2	MCF-7	breast:
2	chr3:138972220..138975029-chr3:138977276..138980675,3	MCF-7	breast:
3	chr3:138963876..138966393-chr3:138976343..138978891,2	MCF-7	breast:
4	chr3:138975901..138977496-chr3:138977709..138980522,2	K562	blood:
5	chr3:138968454..138970679-chr3:138975620..138978024,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C3orf72-7	chr3:138977814-138977975	l_2483_chr3:138972836-138979311_testes
2	lnc-C3orf72-7	chr3:138977814-138977936	ucscGeneNc_uc003ern_2

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1602631	0.86[AMR][1000 genomes]
rs1948400	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6439841	0.80[ASN][1000 genomes]
rs7635629	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138973800-138978000	Weak transcription	Ovary	ovary
2	chr3:138977000-138978000	Enhancers	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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