Variant report
| Variant | rs1602840 |
|---|---|
| Chromosome Location | chr12:60558785-60558786 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:60558094..60560220-chr12:60756513..60758831,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000251822 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10747871 | 0.90[AFR][1000 genomes] |
| rs10784043 | 0.85[AFR][1000 genomes] |
| rs10877397 | 0.89[AMR][1000 genomes] |
| rs10877400 | 0.91[AFR][1000 genomes] |
| rs10877411 | 0.90[AFR][1000 genomes] |
| rs1116481 | 0.91[AFR][1000 genomes] |
| rs1354468 | 0.90[AFR][1000 genomes] |
| rs1493307 | 0.95[AFR][1000 genomes] |
| rs1493333 | 1.00[AMR][1000 genomes] |
| rs1910675 | 0.90[AFR][1000 genomes] |
| rs2364149 | 0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4283019 | 0.93[AFR][1000 genomes] |
| rs4531510 | 0.90[AFR][1000 genomes] |
| rs4641518 | 0.90[AFR][1000 genomes] |
| rs4758851 | 0.87[AMR][1000 genomes] |
| rs7132957 | 0.87[AMR][1000 genomes] |
| rs7301616 | 0.88[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs7970971 | 0.90[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428591 | chr12:60446360-60631044 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv427913 | chr12:60462443-60569344 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv2760273 | chr12:60489188-60561925 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
