Variant report

Variant	rs10747871
Chromosome Location	chr12:60699251-60699252
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10735884	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10784043	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10877400	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10877411	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1116481	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1354468	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1493307	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1602840	0.90[AFR][1000 genomes]
rs1910675	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2364149	0.81[AFR][1000 genomes]
rs4283019	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4531510	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4641518	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4758851	0.85[AMR][1000 genomes]
rs7132957	0.85[AMR][1000 genomes]
rs7298350	0.87[AFR][1000 genomes]
rs7301616	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7970971	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832431	chr12:60626292-60809233	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60695000-60701200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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