Variant report

Variant	rs7298350
Chromosome Location	chr12:60659990-60659991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10735884	1.00[AFR][1000 genomes]
rs10747871	0.87[AFR][1000 genomes]
rs10784043	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10877400	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10877411	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1116481	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1354468	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1493307	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1602840	0.88[YRI][hapmap]
rs1910675	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2251041	1.00[MEX][hapmap]
rs2364149	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs3912932	0.80[YRI][hapmap]
rs4283019	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4468382	1.00[MEX][hapmap];0.80[YRI][hapmap]
rs4531510	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4641518	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7301616	0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7970971	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832431	chr12:60626292-60809233	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60657200-60660600	Enhancers	Hela-S3	cervix
2	chr12:60659400-60660200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr12:60659400-60660200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr12:60659400-60660400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr12:60659400-60661000	Enhancers	NH-A	brain
6	chr12:60659600-60660200	Enhancers	Stomach Mucosa	stomach
7	chr12:60659600-60660400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:60659600-60660400	Enhancers	HepG2	liver
9	chr12:60659600-60660600	Flanking Active TSS	A549	lung
10	chr12:60659600-60661000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:60659800-60661200	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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