Variant report

Variant	rs2251041
Chromosome Location	chr12:60755362-60755363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs1021886	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10784049	1.00[EUR][1000 genomes]
rs11173425	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1119985	1.00[EUR][1000 genomes]
rs1119986	1.00[EUR][1000 genomes]
rs1119987	1.00[EUR][1000 genomes]
rs12312951	1.00[EUR][1000 genomes]
rs12313027	1.00[EUR][1000 genomes]
rs1394325	1.00[EUR][1000 genomes]
rs1394329	1.00[EUR][1000 genomes]
rs1466939	1.00[EUR][1000 genomes]
rs1472738	1.00[EUR][1000 genomes]
rs1504445	1.00[EUR][1000 genomes]
rs1504446	1.00[EUR][1000 genomes]
rs1504447	1.00[EUR][1000 genomes]
rs1504448	1.00[EUR][1000 genomes]
rs1504461	1.00[EUR][1000 genomes]
rs1580917	0.92[EUR][1000 genomes]
rs1587822	1.00[EUR][1000 genomes]
rs1587823	1.00[EUR][1000 genomes]
rs1604863	1.00[EUR][1000 genomes]
rs1604864	1.00[EUR][1000 genomes]
rs17123453	0.85[EUR][1000 genomes]
rs17123473	0.85[EUR][1000 genomes]
rs17123496	0.85[EUR][1000 genomes]
rs17123529	0.85[EUR][1000 genomes]
rs1827639	1.00[EUR][1000 genomes]
rs1827640	1.00[EUR][1000 genomes]
rs1910676	1.00[EUR][1000 genomes]
rs1960370	1.00[EUR][1000 genomes]
rs1961693	1.00[EUR][1000 genomes]
rs1967225	1.00[EUR][1000 genomes]
rs1995517	1.00[EUR][1000 genomes]
rs2047909	1.00[EUR][1000 genomes]
rs2047910	1.00[EUR][1000 genomes]
rs2047911	1.00[EUR][1000 genomes]
rs2089152	1.00[EUR][1000 genomes]
rs2089153	1.00[EUR][1000 genomes]
rs2102256	1.00[EUR][1000 genomes]
rs2134884	1.00[EUR][1000 genomes]
rs2134885	1.00[EUR][1000 genomes]
rs2134886	1.00[EUR][1000 genomes]
rs2202361	1.00[EUR][1000 genomes]
rs2202362	1.00[EUR][1000 genomes]
rs2202363	1.00[EUR][1000 genomes]
rs2202364	1.00[EUR][1000 genomes]
rs2262938	1.00[EUR][1000 genomes]
rs2262940	1.00[EUR][1000 genomes]
rs2363586	1.00[EUR][1000 genomes]
rs2363588	1.00[EUR][1000 genomes]
rs2364149	1.00[MEX][hapmap]
rs2455997	1.00[EUR][1000 genomes]
rs2468380	1.00[EUR][1000 genomes]
rs2468381	1.00[EUR][1000 genomes]
rs2655849	1.00[EUR][1000 genomes]
rs2655850	1.00[EUR][1000 genomes]
rs2655851	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2655854	1.00[EUR][1000 genomes]
rs2655855	1.00[EUR][1000 genomes]
rs2655862	1.00[EUR][1000 genomes]
rs2655863	1.00[EUR][1000 genomes]
rs2655864	1.00[EUR][1000 genomes]
rs2655865	1.00[EUR][1000 genomes]
rs2655866	1.00[EUR][1000 genomes]
rs2655867	1.00[EUR][1000 genomes]
rs2655870	1.00[EUR][1000 genomes]
rs2655872	1.00[EUR][1000 genomes]
rs2655874	1.00[EUR][1000 genomes]
rs2655876	1.00[EUR][1000 genomes]
rs2655881	1.00[EUR][1000 genomes]
rs2655882	1.00[EUR][1000 genomes]
rs2655883	1.00[EUR][1000 genomes]
rs2731450	1.00[EUR][1000 genomes]
rs2731452	1.00[EUR][1000 genomes]
rs2731453	1.00[EUR][1000 genomes]
rs2731454	1.00[EUR][1000 genomes]
rs2731460	1.00[EUR][1000 genomes]
rs2731461	1.00[EUR][1000 genomes]
rs2731463	1.00[EUR][1000 genomes]
rs2731464	1.00[EUR][1000 genomes]
rs2731466	1.00[EUR][1000 genomes]
rs2731478	1.00[EUR][1000 genomes]
rs2731479	1.00[EUR][1000 genomes]
rs2731480	1.00[EUR][1000 genomes]
rs2731481	0.83[EUR][1000 genomes]
rs2731483	1.00[EUR][1000 genomes]
rs2731486	1.00[EUR][1000 genomes]
rs2731489	1.00[EUR][1000 genomes]
rs2731493	1.00[EUR][1000 genomes]
rs2731496	1.00[EUR][1000 genomes]
rs2938648	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2938649	1.00[EUR][1000 genomes]
rs2956516	1.00[EUR][1000 genomes]
rs3912929	0.85[EUR][1000 genomes]
rs4500518	1.00[EUR][1000 genomes]
rs55897976	0.85[EUR][1000 genomes]
rs56739047	0.85[EUR][1000 genomes]
rs59254378	0.85[EUR][1000 genomes]
rs59465291	0.85[EUR][1000 genomes]
rs60106464	0.85[EUR][1000 genomes]
rs60652670	0.85[EUR][1000 genomes]
rs6581317	1.00[EUR][1000 genomes]
rs7301616	1.00[MEX][hapmap]
rs7307145	1.00[EUR][1000 genomes]
rs74093673	0.85[EUR][1000 genomes]
rs74093676	0.85[EUR][1000 genomes]
rs74096730	0.85[EUR][1000 genomes]
rs74096924	0.85[EUR][1000 genomes]
rs74096934	0.85[EUR][1000 genomes]
rs74096935	0.85[EUR][1000 genomes]
rs74096939	0.85[EUR][1000 genomes]
rs74096943	0.85[EUR][1000 genomes]
rs74096947	0.85[EUR][1000 genomes]
rs74096948	0.85[EUR][1000 genomes]
rs74096953	0.85[EUR][1000 genomes]
rs74096958	0.85[EUR][1000 genomes]
rs7965723	0.85[EUR][1000 genomes]
rs7968422	1.00[EUR][1000 genomes]
rs7974290	1.00[EUR][1000 genomes]
rs905724	1.00[EUR][1000 genomes]
rs905725	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832431	chr12:60626292-60809233	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1047466	chr12:60702221-61521156	Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2762983	chr12:60735475-60767081	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3500240	chr12:60752085-60759033	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3500239	chr12:60752535-60758933	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv8977	chr12:60752953-60758579	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3487753	chr12:60753082-60758015	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3500245	chr12:60753104-60758015	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3487764	chr12:60753106-60757953	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv437755	chr12:60753107-60757930	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3500247	chr12:60753108-60758005	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3487742	chr12:60753130-60757990	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3500243	chr12:60753131-60757946	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3487775	chr12:60753136-60757944	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3500244	chr12:60753158-60757952	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv3500246	chr12:60753162-60757948	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	esv3500242	chr12:60753213-60757907	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	esv3487786	chr12:60753217-60757905	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	esv3500248	chr12:60753217-60757905	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	esv20278	chr12:60753340-60757908	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	esv3693123	chr12:60755248-60757479	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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