Variant report

Variant	rs59254378
Chromosome Location	chr12:60581477-60581478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs1021886	0.85[EUR][1000 genomes]
rs10784049	0.85[EUR][1000 genomes]
rs12312951	0.85[EUR][1000 genomes]
rs12313027	0.85[EUR][1000 genomes]
rs1394329	0.85[EUR][1000 genomes]
rs1466939	0.85[EUR][1000 genomes]
rs1504461	0.85[EUR][1000 genomes]
rs1587822	0.85[EUR][1000 genomes]
rs1587823	0.85[EUR][1000 genomes]
rs1604863	0.85[EUR][1000 genomes]
rs1604864	0.85[EUR][1000 genomes]
rs17123432	1.00[EUR][1000 genomes]
rs17123453	1.00[EUR][1000 genomes]
rs17123464	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17123473	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17123496	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17123529	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17123574	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1827639	0.85[EUR][1000 genomes]
rs1827640	0.85[EUR][1000 genomes]
rs1910676	0.85[EUR][1000 genomes]
rs1960370	0.85[EUR][1000 genomes]
rs1961693	0.85[EUR][1000 genomes]
rs1967225	0.85[EUR][1000 genomes]
rs1995517	0.85[EUR][1000 genomes]
rs2089152	0.85[EUR][1000 genomes]
rs2089153	0.85[EUR][1000 genomes]
rs2102256	0.85[EUR][1000 genomes]
rs2134884	0.85[EUR][1000 genomes]
rs2134885	0.85[EUR][1000 genomes]
rs2134886	0.85[EUR][1000 genomes]
rs2202361	0.85[EUR][1000 genomes]
rs2202362	0.85[EUR][1000 genomes]
rs2202363	0.85[EUR][1000 genomes]
rs2202364	0.85[EUR][1000 genomes]
rs2262938	0.85[EUR][1000 genomes]
rs2262940	0.85[EUR][1000 genomes]
rs2363586	0.85[EUR][1000 genomes]
rs2363588	0.85[EUR][1000 genomes]
rs2455997	0.85[EUR][1000 genomes]
rs2468380	0.85[EUR][1000 genomes]
rs2468381	0.85[EUR][1000 genomes]
rs2655849	0.85[EUR][1000 genomes]
rs2655850	0.85[EUR][1000 genomes]
rs2655851	0.85[EUR][1000 genomes]
rs2655854	0.85[EUR][1000 genomes]
rs2655855	0.85[EUR][1000 genomes]
rs2655862	0.85[EUR][1000 genomes]
rs2655863	0.85[EUR][1000 genomes]
rs2655864	0.85[EUR][1000 genomes]
rs2655865	0.85[EUR][1000 genomes]
rs2655866	0.85[EUR][1000 genomes]
rs2655867	0.85[EUR][1000 genomes]
rs2655881	0.85[EUR][1000 genomes]
rs2655882	0.85[EUR][1000 genomes]
rs2655883	0.85[EUR][1000 genomes]
rs2731450	0.85[EUR][1000 genomes]
rs2731452	0.85[EUR][1000 genomes]
rs2731453	0.85[EUR][1000 genomes]
rs2731454	0.85[EUR][1000 genomes]
rs2731478	0.85[EUR][1000 genomes]
rs2731479	0.85[EUR][1000 genomes]
rs2731480	0.85[EUR][1000 genomes]
rs2731483	0.85[EUR][1000 genomes]
rs2731486	0.85[EUR][1000 genomes]
rs2731489	0.85[EUR][1000 genomes]
rs2731493	0.85[EUR][1000 genomes]
rs2731496	0.85[EUR][1000 genomes]
rs2938648	0.85[EUR][1000 genomes]
rs3912929	1.00[EUR][1000 genomes]
rs4500518	0.85[EUR][1000 genomes]
rs55897976	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56145591	0.93[EUR][1000 genomes]
rs56739047	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59465291	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60106464	1.00[EUR][1000 genomes]
rs60652670	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6581317	0.85[EUR][1000 genomes]
rs7307145	0.85[EUR][1000 genomes]
rs73363801	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73365606	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73370714	0.93[EUR][1000 genomes]
rs73370721	0.93[EUR][1000 genomes]
rs73370795	0.93[EUR][1000 genomes]
rs73370797	0.93[EUR][1000 genomes]
rs73370800	0.93[EUR][1000 genomes]
rs74093673	1.00[EUR][1000 genomes]
rs74093676	1.00[EUR][1000 genomes]
rs74096730	1.00[EUR][1000 genomes]
rs74096918	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74096923	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74096924	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74096934	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74096935	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74096939	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74096943	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74096947	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74096948	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74096953	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74096958	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7965723	1.00[EUR][1000 genomes]
rs7968422	0.85[EUR][1000 genomes]
rs7974290	0.85[EUR][1000 genomes]
rs905724	0.85[EUR][1000 genomes]
rs905725	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60567200-60582400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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