Variant report

Variant	rs17123432
Chromosome Location	chr12:60539149-60539150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1394329	0.85[EUR][1000 genomes]
rs1504461	0.85[EUR][1000 genomes]
rs17123453	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17123464	0.93[EUR][1000 genomes]
rs17123473	1.00[EUR][1000 genomes]
rs17123496	1.00[EUR][1000 genomes]
rs17123529	1.00[EUR][1000 genomes]
rs17123574	0.93[EUR][1000 genomes]
rs1995517	0.85[EUR][1000 genomes]
rs3912929	1.00[EUR][1000 genomes]
rs4500518	0.85[EUR][1000 genomes]
rs55897976	1.00[EUR][1000 genomes]
rs56145591	0.93[EUR][1000 genomes]
rs56739047	1.00[EUR][1000 genomes]
rs59254378	1.00[EUR][1000 genomes]
rs59465291	1.00[EUR][1000 genomes]
rs60106464	1.00[EUR][1000 genomes]
rs60652670	1.00[EUR][1000 genomes]
rs73363801	0.93[EUR][1000 genomes]
rs73365606	0.93[EUR][1000 genomes]
rs73370714	0.93[EUR][1000 genomes]
rs73370721	0.93[EUR][1000 genomes]
rs73370795	0.93[EUR][1000 genomes]
rs73370797	0.93[EUR][1000 genomes]
rs73370800	0.93[EUR][1000 genomes]
rs74093673	1.00[EUR][1000 genomes]
rs74093676	1.00[EUR][1000 genomes]
rs74096730	1.00[EUR][1000 genomes]
rs74096918	0.93[EUR][1000 genomes]
rs74096923	0.93[EUR][1000 genomes]
rs74096924	1.00[EUR][1000 genomes]
rs74096934	1.00[EUR][1000 genomes]
rs74096935	1.00[EUR][1000 genomes]
rs74096939	1.00[EUR][1000 genomes]
rs74096943	1.00[EUR][1000 genomes]
rs74096947	1.00[EUR][1000 genomes]
rs74096948	1.00[EUR][1000 genomes]
rs74096953	1.00[EUR][1000 genomes]
rs74096958	1.00[EUR][1000 genomes]
rs7965723	1.00[EUR][1000 genomes]
rs7968422	0.85[EUR][1000 genomes]
rs7974290	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv427913	chr12:60462443-60569344	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2760273	chr12:60489188-60561925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv511495	chr12:60518599-60541932	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv559107	chr12:60518842-60540108	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv559108	chr12:60518842-60548334	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv559119	chr12:60522630-60540108	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1793962	chr12:60522630-60541932	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1846332	chr12:60522725-60541932	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1851665	chr12:60522725-60549171	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv559129	chr12:60522829-60540108	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv559136	chr12:60523425-60540108	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60536800-60540600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:60537000-60540000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:60538800-60540000	Weak transcription	K562	blood

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