Variant report

Variant	rs3912929
Chromosome Location	chr12:60564458-60564459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:60563916..60564532-chr5:120756222..120756804,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1021886	0.85[EUR][1000 genomes]
rs10784049	0.85[EUR][1000 genomes]
rs12312951	0.85[EUR][1000 genomes]
rs12313027	0.85[EUR][1000 genomes]
rs1394329	0.85[EUR][1000 genomes]
rs1466939	0.85[EUR][1000 genomes]
rs1504461	0.85[EUR][1000 genomes]
rs1587822	0.85[EUR][1000 genomes]
rs1604863	0.85[EUR][1000 genomes]
rs1604864	0.85[EUR][1000 genomes]
rs17123432	1.00[EUR][1000 genomes]
rs17123453	1.00[EUR][1000 genomes]
rs17123464	0.93[EUR][1000 genomes]
rs17123473	1.00[EUR][1000 genomes]
rs17123496	1.00[EUR][1000 genomes]
rs17123529	1.00[EUR][1000 genomes]
rs17123574	0.93[EUR][1000 genomes]
rs1961693	0.85[EUR][1000 genomes]
rs1995517	0.85[EUR][1000 genomes]
rs2089152	0.85[EUR][1000 genomes]
rs2089153	0.85[EUR][1000 genomes]
rs2102256	0.85[EUR][1000 genomes]
rs2202361	0.85[EUR][1000 genomes]
rs2262940	0.85[EUR][1000 genomes]
rs2363588	0.85[EUR][1000 genomes]
rs2455997	0.85[EUR][1000 genomes]
rs2468380	0.85[EUR][1000 genomes]
rs2468381	0.85[EUR][1000 genomes]
rs2655881	0.85[EUR][1000 genomes]
rs2655882	0.85[EUR][1000 genomes]
rs2655883	0.85[EUR][1000 genomes]
rs2731450	0.85[EUR][1000 genomes]
rs2731489	0.85[EUR][1000 genomes]
rs2731493	0.85[EUR][1000 genomes]
rs2731496	0.85[EUR][1000 genomes]
rs4500518	0.85[EUR][1000 genomes]
rs55897976	1.00[EUR][1000 genomes]
rs56145591	0.93[EUR][1000 genomes]
rs56739047	1.00[EUR][1000 genomes]
rs59254378	1.00[EUR][1000 genomes]
rs59465291	1.00[EUR][1000 genomes]
rs60106464	1.00[EUR][1000 genomes]
rs60652670	1.00[EUR][1000 genomes]
rs6581317	0.85[EUR][1000 genomes]
rs7307145	0.85[EUR][1000 genomes]
rs73363801	0.93[EUR][1000 genomes]
rs73365606	0.93[EUR][1000 genomes]
rs73370714	0.93[EUR][1000 genomes]
rs73370721	0.93[EUR][1000 genomes]
rs73370795	0.93[EUR][1000 genomes]
rs73370797	0.93[EUR][1000 genomes]
rs73370800	0.93[EUR][1000 genomes]
rs74093673	1.00[EUR][1000 genomes]
rs74093676	1.00[EUR][1000 genomes]
rs74096730	1.00[EUR][1000 genomes]
rs74096918	0.93[EUR][1000 genomes]
rs74096923	0.93[EUR][1000 genomes]
rs74096924	1.00[EUR][1000 genomes]
rs74096934	1.00[EUR][1000 genomes]
rs74096935	1.00[EUR][1000 genomes]
rs74096939	1.00[EUR][1000 genomes]
rs74096943	1.00[EUR][1000 genomes]
rs74096947	1.00[EUR][1000 genomes]
rs74096948	1.00[EUR][1000 genomes]
rs74096953	1.00[EUR][1000 genomes]
rs74096958	1.00[EUR][1000 genomes]
rs7965723	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7968422	0.85[EUR][1000 genomes]
rs7974290	0.85[EUR][1000 genomes]
rs905724	0.85[EUR][1000 genomes]
rs905725	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv427913	chr12:60462443-60569344	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60560200-60565200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr12:60563600-60568000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links