Variant report

Variant	rs56145591
Chromosome Location	chr12:60690452-60690453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs17123432	0.93[EUR][1000 genomes]
rs17123453	0.93[EUR][1000 genomes]
rs17123464	1.00[EUR][1000 genomes]
rs17123473	0.93[EUR][1000 genomes]
rs17123496	0.93[EUR][1000 genomes]
rs17123529	0.93[EUR][1000 genomes]
rs17123574	1.00[EUR][1000 genomes]
rs3912929	0.93[EUR][1000 genomes]
rs55897976	0.93[EUR][1000 genomes]
rs56739047	0.93[EUR][1000 genomes]
rs59254378	0.93[EUR][1000 genomes]
rs59465291	0.93[EUR][1000 genomes]
rs60106464	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60652670	0.93[EUR][1000 genomes]
rs73363801	1.00[EUR][1000 genomes]
rs73365606	1.00[EUR][1000 genomes]
rs73370714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73370721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73370795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73370797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73370800	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74093673	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74093676	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74096730	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74096918	1.00[EUR][1000 genomes]
rs74096923	0.87[EUR][1000 genomes]
rs74096924	0.93[EUR][1000 genomes]
rs74096934	0.93[EUR][1000 genomes]
rs74096935	0.93[EUR][1000 genomes]
rs74096939	0.93[EUR][1000 genomes]
rs74096943	0.93[EUR][1000 genomes]
rs74096947	0.93[EUR][1000 genomes]
rs74096948	0.93[EUR][1000 genomes]
rs74096953	0.93[EUR][1000 genomes]
rs74096958	0.93[EUR][1000 genomes]
rs7965723	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832431	chr12:60626292-60809233	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60679600-60691000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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