Variant report

Variant	rs17123453
Chromosome Location	chr12:60553534-60553535
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1021886	0.85[EUR][1000 genomes]
rs10784049	0.85[EUR][1000 genomes]
rs1394329	0.85[EUR][1000 genomes]
rs1466939	0.85[EUR][1000 genomes]
rs1504461	0.85[EUR][1000 genomes]
rs17123432	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17123464	0.93[EUR][1000 genomes]
rs17123473	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17123496	1.00[EUR][1000 genomes]
rs17123529	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17123574	0.93[EUR][1000 genomes]
rs1995517	0.85[EUR][1000 genomes]
rs2655881	0.85[EUR][1000 genomes]
rs2655882	0.85[EUR][1000 genomes]
rs2655883	0.85[EUR][1000 genomes]
rs2731450	0.85[EUR][1000 genomes]
rs3912929	1.00[EUR][1000 genomes]
rs4500518	0.85[EUR][1000 genomes]
rs55897976	1.00[EUR][1000 genomes]
rs56145591	0.93[EUR][1000 genomes]
rs56739047	1.00[EUR][1000 genomes]
rs59254378	1.00[EUR][1000 genomes]
rs59465291	1.00[EUR][1000 genomes]
rs60106464	1.00[EUR][1000 genomes]
rs60652670	1.00[EUR][1000 genomes]
rs6581317	0.85[EUR][1000 genomes]
rs7307145	0.85[EUR][1000 genomes]
rs73363801	0.93[EUR][1000 genomes]
rs73365606	0.93[EUR][1000 genomes]
rs73370714	0.93[EUR][1000 genomes]
rs73370721	0.93[EUR][1000 genomes]
rs73370795	0.93[EUR][1000 genomes]
rs73370797	0.93[EUR][1000 genomes]
rs73370800	0.93[EUR][1000 genomes]
rs735925	0.89[AFR][1000 genomes]
rs74093673	1.00[EUR][1000 genomes]
rs74093676	1.00[EUR][1000 genomes]
rs74096730	1.00[EUR][1000 genomes]
rs74096918	0.93[EUR][1000 genomes]
rs74096923	0.93[EUR][1000 genomes]
rs74096924	1.00[EUR][1000 genomes]
rs74096934	1.00[EUR][1000 genomes]
rs74096935	1.00[EUR][1000 genomes]
rs74096939	1.00[EUR][1000 genomes]
rs74096943	1.00[EUR][1000 genomes]
rs74096947	1.00[EUR][1000 genomes]
rs74096948	1.00[EUR][1000 genomes]
rs74096953	1.00[EUR][1000 genomes]
rs74096958	1.00[EUR][1000 genomes]
rs7965723	1.00[EUR][1000 genomes]
rs7968422	0.85[EUR][1000 genomes]
rs7974290	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv427913	chr12:60462443-60569344	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2760273	chr12:60489188-60561925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60548200-60558200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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