Variant report

Variant	rs17123464
Chromosome Location	chr12:60565520-60565521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs17123432	0.93[EUR][1000 genomes]
rs17123453	0.93[EUR][1000 genomes]
rs17123473	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17123496	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17123529	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17123574	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3912929	0.93[EUR][1000 genomes]
rs55897976	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56145591	1.00[EUR][1000 genomes]
rs56739047	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59254378	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59465291	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60106464	0.93[EUR][1000 genomes]
rs60652670	0.93[EUR][1000 genomes]
rs73363801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73365606	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73370714	1.00[EUR][1000 genomes]
rs73370721	1.00[EUR][1000 genomes]
rs73370795	1.00[EUR][1000 genomes]
rs73370797	1.00[EUR][1000 genomes]
rs73370800	1.00[EUR][1000 genomes]
rs74093673	0.93[EUR][1000 genomes]
rs74093676	0.93[EUR][1000 genomes]
rs74096730	0.93[EUR][1000 genomes]
rs74096918	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74096923	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74096924	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74096934	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74096935	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74096939	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74096943	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74096947	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74096948	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74096953	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74096958	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7965723	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv427913	chr12:60462443-60569344	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60563600-60568000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:60565200-60566200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:60565200-60566400	Enhancers	Hela-S3	cervix
4	chr12:60565200-60566600	Enhancers	HMEC	breast
5	chr12:60565200-60567400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr12:60565400-60567000	Enhancers	NH-A	brain
7	chr12:60565400-60567200	Enhancers	HUVEC	blood vessel

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