Variant report

Variant	rs74096934
Chromosome Location	chr12:60609005-60609006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr12:60608871-60609410	MCF-7	breast:	n/a	n/a
2	SIN3AK20	chr12:60608600-60609538	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000258184	TF binding region

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs1021886	0.85[EUR][1000 genomes]
rs10784049	0.85[EUR][1000 genomes]
rs1119985	0.85[EUR][1000 genomes]
rs1119986	0.85[EUR][1000 genomes]
rs1119987	0.85[EUR][1000 genomes]
rs12312951	0.85[EUR][1000 genomes]
rs12313027	0.85[EUR][1000 genomes]
rs1394325	0.85[EUR][1000 genomes]
rs1394329	0.85[EUR][1000 genomes]
rs1466939	0.85[EUR][1000 genomes]
rs1472738	0.85[EUR][1000 genomes]
rs1504445	0.85[EUR][1000 genomes]
rs1504446	0.85[EUR][1000 genomes]
rs1504447	0.85[EUR][1000 genomes]
rs1504448	0.85[EUR][1000 genomes]
rs1504461	0.85[EUR][1000 genomes]
rs1587822	0.85[EUR][1000 genomes]
rs1587823	0.85[EUR][1000 genomes]
rs1604863	0.85[EUR][1000 genomes]
rs1604864	0.85[EUR][1000 genomes]
rs17123432	1.00[EUR][1000 genomes]
rs17123453	1.00[EUR][1000 genomes]
rs17123464	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17123473	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17123496	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17123529	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17123574	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1827639	0.85[EUR][1000 genomes]
rs1827640	0.85[EUR][1000 genomes]
rs1910676	0.85[EUR][1000 genomes]
rs1960370	0.85[EUR][1000 genomes]
rs1961693	0.85[EUR][1000 genomes]
rs1967225	0.85[EUR][1000 genomes]
rs1995517	0.85[EUR][1000 genomes]
rs2047909	0.85[EUR][1000 genomes]
rs2047910	0.85[EUR][1000 genomes]
rs2047911	0.85[EUR][1000 genomes]
rs2089152	0.85[EUR][1000 genomes]
rs2089153	0.85[EUR][1000 genomes]
rs2102256	0.85[EUR][1000 genomes]
rs2134884	0.85[EUR][1000 genomes]
rs2134885	0.85[EUR][1000 genomes]
rs2134886	0.85[EUR][1000 genomes]
rs2202361	0.85[EUR][1000 genomes]
rs2202362	0.85[EUR][1000 genomes]
rs2202363	0.85[EUR][1000 genomes]
rs2202364	0.85[EUR][1000 genomes]
rs2262938	0.85[EUR][1000 genomes]
rs2262940	0.85[EUR][1000 genomes]
rs2363586	0.85[EUR][1000 genomes]
rs2363588	0.85[EUR][1000 genomes]
rs2455997	0.85[EUR][1000 genomes]
rs2468380	0.85[EUR][1000 genomes]
rs2468381	0.85[EUR][1000 genomes]
rs2655849	0.85[EUR][1000 genomes]
rs2655850	0.85[EUR][1000 genomes]
rs2655851	0.85[EUR][1000 genomes]
rs2655854	0.85[EUR][1000 genomes]
rs2655855	0.85[EUR][1000 genomes]
rs2655862	0.85[EUR][1000 genomes]
rs2655863	0.85[EUR][1000 genomes]
rs2655864	0.85[EUR][1000 genomes]
rs2655865	0.85[EUR][1000 genomes]
rs2655866	0.85[EUR][1000 genomes]
rs2655867	0.85[EUR][1000 genomes]
rs2655870	0.85[EUR][1000 genomes]
rs2655872	0.85[EUR][1000 genomes]
rs2655874	0.85[EUR][1000 genomes]
rs2655876	0.85[EUR][1000 genomes]
rs2655881	0.85[EUR][1000 genomes]
rs2655882	0.85[EUR][1000 genomes]
rs2655883	0.85[EUR][1000 genomes]
rs2731450	0.85[EUR][1000 genomes]
rs2731452	0.85[EUR][1000 genomes]
rs2731453	0.85[EUR][1000 genomes]
rs2731454	0.85[EUR][1000 genomes]
rs2731460	0.85[EUR][1000 genomes]
rs2731461	0.85[EUR][1000 genomes]
rs2731463	0.85[EUR][1000 genomes]
rs2731464	0.85[EUR][1000 genomes]
rs2731466	0.85[EUR][1000 genomes]
rs2731478	0.85[EUR][1000 genomes]
rs2731479	0.85[EUR][1000 genomes]
rs2731480	0.85[EUR][1000 genomes]
rs2731483	0.85[EUR][1000 genomes]
rs2731486	0.85[EUR][1000 genomes]
rs2731489	0.85[EUR][1000 genomes]
rs2731493	0.85[EUR][1000 genomes]
rs2731496	0.85[EUR][1000 genomes]
rs2938648	0.85[EUR][1000 genomes]
rs2938649	0.85[EUR][1000 genomes]
rs2956516	0.85[EUR][1000 genomes]
rs3912929	1.00[EUR][1000 genomes]
rs4500518	0.85[EUR][1000 genomes]
rs55897976	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56145591	0.93[EUR][1000 genomes]
rs56739047	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59254378	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59465291	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60106464	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60652670	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6581317	0.85[EUR][1000 genomes]
rs7307145	0.85[EUR][1000 genomes]
rs73363801	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73365606	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73370714	0.93[EUR][1000 genomes]
rs73370721	0.93[EUR][1000 genomes]
rs73370795	0.93[EUR][1000 genomes]
rs73370797	0.93[EUR][1000 genomes]
rs73370800	0.93[EUR][1000 genomes]
rs74093673	1.00[EUR][1000 genomes]
rs74093676	1.00[EUR][1000 genomes]
rs74096730	1.00[EUR][1000 genomes]
rs74096918	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74096923	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74096924	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74096935	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74096939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74096943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74096947	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74096948	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74096953	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74096958	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7965723	1.00[EUR][1000 genomes]
rs7968422	0.85[EUR][1000 genomes]
rs7974290	0.85[EUR][1000 genomes]
rs905724	0.85[EUR][1000 genomes]
rs905725	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2754064	chr12:60608389-60645117	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60599600-60645400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:60609000-60610200	Enhancers	HUVEC	blood vessel

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