Variant report

Variant	rs10784043
Chromosome Location	chr12:60667060-60667061
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10735884	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10747871	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10877400	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10877411	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1116481	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1354468	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1493307	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1602840	0.85[AFR][1000 genomes]
rs1910675	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4283019	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4531510	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4641518	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7298350	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7301616	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7970971	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832431	chr12:60626292-60809233	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60663800-60675600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:60664200-60675400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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