Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10735884	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10747871	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10784021	0.85[AMR][1000 genomes]
rs10784043	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10877379	0.85[AMR][1000 genomes]
rs10877382	0.85[AMR][1000 genomes]
rs10877384	0.85[AMR][1000 genomes]
rs10877411	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1116481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1354468	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1493307	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1602840	0.88[YRI][hapmap];0.91[AFR][1000 genomes]
rs1910675	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2251041	1.00[MEX][hapmap]
rs2364149	0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2364701	0.85[AMR][1000 genomes]
rs3912932	0.80[YRI][hapmap]
rs4283019	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4468382	1.00[MEX][hapmap];0.80[YRI][hapmap]
rs4519125	0.85[AMR][1000 genomes]
rs4531510	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4641518	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6581292	0.85[AMR][1000 genomes]
rs7298350	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7299084	0.85[AMR][1000 genomes]
rs7301616	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7970971	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60586000-60603400	Weak transcription	HMEC	breast
2	chr12:60595800-60600200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:60599000-60600200	Enhancers	A549	lung
4	chr12:60599400-60603400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:60599600-60603200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:60599600-60603400	Weak transcription	K562	blood
7	chr12:60599600-60606000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:60599600-60645400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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