Variant report

Variant	rs1603332
Chromosome Location	chr6:164991047-164991048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164974094..164976654-chr6:164987580..164991765,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1021614	0.99[ASN][1000 genomes]
rs1027420	0.80[ASN][1000 genomes]
rs1391239	0.99[ASN][1000 genomes]
rs1497735	0.98[ASN][1000 genomes]
rs1909052	0.99[ASN][1000 genomes]
rs2019943	0.99[ASN][1000 genomes]
rs2132411	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2201806	0.97[ASN][1000 genomes]
rs4709856	0.99[ASN][1000 genomes]
rs4709863	0.99[ASN][1000 genomes]
rs6919063	0.85[ASN][1000 genomes]
rs6919939	0.86[ASN][1000 genomes]
rs6920546	0.99[ASN][1000 genomes]
rs6935809	0.85[ASN][1000 genomes]
rs7760143	0.99[ASN][1000 genomes]
rs9295282	0.99[ASN][1000 genomes]
rs9347872	0.99[ASN][1000 genomes]
rs9365729	0.99[ASN][1000 genomes]
rs9456975	0.85[ASN][1000 genomes]
rs9456976	0.85[ASN][1000 genomes]
rs9459136	0.86[ASN][1000 genomes]
rs9459138	0.99[ASN][1000 genomes]
rs9918342	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv886919	chr6:164756364-165079834	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv511924	chr6:164762179-165077399	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1016147	chr6:164765938-165046731	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1018087	chr6:164938719-165048492	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1017076	chr6:164945167-165195092	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1603332	CCR6	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164985800-164991400	Weak transcription	Brain Substantia Nigra	brain
2	chr6:164986000-164994200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:164988800-164991200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:164989600-164991200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:164989600-164991400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:164989600-164993000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:164989800-164991200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:164989800-164991400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:164990400-164991400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:164990400-164991400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:164990800-164991400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:164991000-164991600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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