Variant report

Variant	rs6920546
Chromosome Location	chr6:164981926-164981927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1021614	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1027420	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1391239	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497735	0.99[ASN][1000 genomes]
rs1603332	0.99[ASN][1000 genomes]
rs1909052	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2019943	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132411	0.99[ASN][1000 genomes]
rs2172970	0.88[EUR][1000 genomes]
rs2201806	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4709856	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709862	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4709863	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919063	0.86[ASN][1000 genomes]
rs6919939	0.88[ASN][1000 genomes]
rs6935809	0.86[ASN][1000 genomes]
rs7760143	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295282	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9347872	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9365729	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9456975	0.86[ASN][1000 genomes]
rs9456976	0.86[ASN][1000 genomes]
rs9459136	0.88[ASN][1000 genomes]
rs9459138	0.99[ASN][1000 genomes]
rs9918342	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv886919	chr6:164756364-165079834	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv511924	chr6:164762179-165077399	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1016147	chr6:164765938-165046731	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1018087	chr6:164938719-165048492	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1017076	chr6:164945167-165195092	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164976400-164982800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164980200-164982000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:164981200-164984000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links