Variant report
Variant | rs2019943 |
---|---|
Chromosome Location | chr6:164984115-164984116 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1021614 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1027420 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs10455798 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs1391239 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1497735 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1603332 | 0.99[ASN][1000 genomes] |
rs1909052 | 1.00[ASN][1000 genomes] |
rs1979780 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs2132411 | 0.99[ASN][1000 genomes] |
rs2172970 | 0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2201806 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4709856 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4709862 | 0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4709863 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6919063 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6919939 | 0.88[ASN][1000 genomes] |
rs6920546 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6935809 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7760143 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9295282 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9347872 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9365729 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9456975 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs9456976 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs9459136 | 0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs9459138 | 0.83[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs9459144 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs9459145 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs9918342 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1029952 | chr6:164463355-165268911 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
2 | nsv886919 | chr6:164756364-165079834 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv511924 | chr6:164762179-165077399 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
4 | nsv1016147 | chr6:164765938-165046731 | Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv1018087 | chr6:164938719-165048492 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv1017076 | chr6:164945167-165195092 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:164982000-164984400 | ZNF genes & repeats | Cortex derived primary cultured neurospheres | brain |
2 | chr6:164982000-164990400 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
3 | chr6:164984000-164990200 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |