Variant report

Variant	rs4709863
Chromosome Location	chr6:164985806-164985807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1021614	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1027420	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10455798	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1391239	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497735	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1603332	0.99[ASN][1000 genomes]
rs1909052	1.00[ASN][1000 genomes]
rs1979780	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2019943	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132411	0.99[ASN][1000 genomes]
rs2172970	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2201806	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4709856	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709862	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6919063	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6919939	0.88[ASN][1000 genomes]
rs6920546	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935809	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7760143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295282	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9347872	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9365729	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9456975	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9456976	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9459136	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9459138	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9459144	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9459145	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9918342	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029952	chr6:164463355-165268911	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv886919	chr6:164756364-165079834	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv511924	chr6:164762179-165077399	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1016147	chr6:164765938-165046731	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1018087	chr6:164938719-165048492	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1017076	chr6:164945167-165195092	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164982000-164990400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:164984000-164990200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:164984600-164986400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:164984600-164986800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:164984600-164986800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:164984800-164986200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:164984800-164986200	Enhancers	Brain Hippocampus Middle	brain
8	chr6:164985400-164986000	Enhancers	Brain Cingulate Gyrus	brain
9	chr6:164985600-164986000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:164985800-164989600	Weak transcription	Brain Anterior Caudate	brain
11	chr6:164985800-164990200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:164985800-164991400	Weak transcription	Brain Substantia Nigra	brain

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