Variant report

Variant	rs160646
Chromosome Location	chr7:65556280-65556281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:65548684..65553899-chr7:65555576..65557762,5	K562	blood:
2	chr7:65547913..65550184-chr7:65555557..65557762,2	K562	blood:
3	chr7:65551436..65553983-chr7:65555328..65557466,5	K562	blood:
4	chr7:65555345..65557096-chr7:65580124..65582089,2	K562	blood:
5	chr7:65544752..65547246-chr7:65554912..65556822,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126522	Chromatin interaction
ENSG00000249319	Chromatin interaction

Extended variants
information (count: 214 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:209)

rs_ID	r²[population]
rs1039664	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1061361	0.91[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10807699	0.87[AMR][1000 genomes]
rs10807701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1134256	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11538349	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1167613	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1177514	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12530490	1.00[YRI][hapmap]
rs12698508	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12698509	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12698511	0.85[ASN][1000 genomes]
rs13226598	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13308751	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1499613	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs1499614	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.89[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs1546059	0.82[AMR][1000 genomes]
rs160543	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs160637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs160638	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs160639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs160642	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs160643	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs160644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs160648	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs160649	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs160651	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs160652	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs160653	0.96[ASN][1000 genomes]
rs160655	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs160656	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs160657	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1626926	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1701745	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1701750	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1701758	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1701759	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1715235	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1723265	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1723266	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1723267	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1723269	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1723270	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1723272	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs182600	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs186378	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1873494	0.82[AMR][1000 genomes]
rs188765	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1964692	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1979823	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs2177703	0.81[ASN][1000 genomes]
rs2243480	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes]
rs2257790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs2420171	0.89[AMR][1000 genomes]
rs2420172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs2456483	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2460422	0.93[AMR][1000 genomes]
rs2460425	0.93[AMR][1000 genomes]
rs2460426	0.93[AMR][1000 genomes]
rs2460431	0.93[AMR][1000 genomes]
rs2462569	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2465120	0.93[AMR][1000 genomes]
rs2637561	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2658583	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2949697	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2961102	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3105600	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs313798	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs313799	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs313800	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs313801	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs313802	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs313803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs313807	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs313808	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs313809	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs313813	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs313814	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs313819	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs313820	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs313822	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs313824	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs313831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs313832	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs313833	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs316304	0.93[AMR][1000 genomes]
rs316307	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs316313	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs316314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs316315	1.00[ASW][hapmap];0.84[CEU][hapmap];0.92[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs316317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes]
rs316318	0.93[AMR][1000 genomes]
rs316321	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes]
rs316322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes]
rs316325	0.93[AMR][1000 genomes]
rs316326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes]
rs316327	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes]
rs316329	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes]
rs316331	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes]
rs316332	0.87[AMR][1000 genomes]
rs316333	0.89[AMR][1000 genomes]
rs316334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes]
rs34032527	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34136756	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.81[ASN][1000 genomes]
rs34193460	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.81[ASN][1000 genomes]
rs34466769	0.84[GIH][hapmap]
rs34529418	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34560516	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34577383	0.81[ASN][1000 genomes]
rs34628538	0.83[ASN][1000 genomes]
rs34637256	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap]
rs34804747	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34933526	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.81[ASN][1000 genomes]
rs34970380	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35046236	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35087093	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35260440	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35268390	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35310401	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.81[ASN][1000 genomes]
rs35391607	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs35396113	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35432774	0.81[ASN][1000 genomes]
rs35480979	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs35542501	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35679560	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35820085	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36004293	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36033484	0.81[ASN][1000 genomes]
rs36068983	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36084489	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36127118	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs383402	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs387676	0.93[AMR][1000 genomes]
rs392355	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs402418	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs403089	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4145008	0.85[AMR][1000 genomes]
rs419603	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes]
rs422164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs423187	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs427044	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs431076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes]
rs431168	0.88[ASN][1000 genomes]
rs431318	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs437889	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4481472	0.80[AMR][1000 genomes]
rs448377	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs451396	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs458291	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs462853	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs465359	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs466983	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718309	0.93[AMR][1000 genomes]
rs4718315	0.84[AMR][1000 genomes]
rs4718316	0.82[AMR][1000 genomes]
rs4718317	0.82[AMR][1000 genomes]
rs55700941	0.81[ASN][1000 genomes]
rs55876148	0.81[ASN][1000 genomes]
rs55886244	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55895244	0.81[ASN][1000 genomes]
rs56016656	0.81[ASN][1000 genomes]
rs56171161	0.81[ASN][1000 genomes]
rs56955188	0.81[ASN][1000 genomes]
rs56985706	0.81[ASN][1000 genomes]
rs57057549	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57126451	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58207111	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58330502	0.81[ASN][1000 genomes]
rs59794892	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59966766	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6460274	0.93[AMR][1000 genomes]
rs6460277	0.81[AMR][1000 genomes]
rs67728539	0.81[ASN][1000 genomes]
rs68189316	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6949812	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap]
rs6958289	0.82[AMR][1000 genomes]
rs6958420	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6959002	0.82[AMR][1000 genomes]
rs6964245	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs6966322	0.85[AMR][1000 genomes]
rs6970243	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.81[ASN][1000 genomes]
rs6974723	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs709607	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73136349	0.93[AMR][1000 genomes]
rs73142162	0.81[ASN][1000 genomes]
rs73142166	0.81[ASN][1000 genomes]
rs73148097	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73150014	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73150016	0.83[ASN][1000 genomes]
rs7778911	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs7787230	0.93[AMR][1000 genomes]
rs7794661	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.81[ASN][1000 genomes]
rs7795242	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.81[ASN][1000 genomes]
rs7804223	0.82[AMR][1000 genomes]
rs780453	0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7806717	0.81[ASN][1000 genomes]
rs781141	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs781142	0.91[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs781149	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs781150	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs781153	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs781154	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs781155	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs781156	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs781157	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs906134	0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs937108	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs958550	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs9769882	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv888325	chr7:65474919-65575893	Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1021186	chr7:65492601-65663438	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv984546	chr7:65531382-65556631	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs160646	ZNF273	cis	parietal	SCAN
rs160646	VKORC1L1	Cis_1M	lymphoblastoid	RTeQTL
rs160646	ASL	cis	multi-tissue	Pritchard
rs160646	ASL	Cis_1M	lymphoblastoid	RTeQTL
rs160646	ASL	cis	cerebellum	SCAN
rs160646	GUSB	cis	Whole Blood	GTEx
rs160646	RP4-756H11.3	cis	Skin Sun Exposed Lower leg	GTEx
rs160646	RP4-756H11.3	cis	lung	GTEx
rs160646	VKORC1L1	cis	Whole Blood	GTEx
rs160646	CRCP	cis	cerebellum	SCAN
rs160646	VKORC1L1	cis	parietal	SCAN
rs160646	ZNF117	cis	parietal	SCAN
rs160646	CRCP	cis	parietal	SCAN
rs160646	ZNF117	cis	cerebellum	SCAN

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65541600-65565000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:65541800-65556800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:65541800-65564600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:65541800-65564600	Weak transcription	Fetal Brain Female	brain
5	chr7:65541800-65564800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr7:65542000-65559600	Weak transcription	Psoas Muscle	Psoas
7	chr7:65542000-65564600	Weak transcription	Primary B cells from cord blood	blood
8	chr7:65542000-65564800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:65542000-65564800	Weak transcription	Aorta	Aorta
10	chr7:65542000-65564800	Weak transcription	HSMM	muscle
11	chr7:65542200-65564600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:65542200-65564600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr7:65542200-65564600	Weak transcription	Brain Angular Gyrus	brain
14	chr7:65542200-65564600	Weak transcription	Fetal Kidney	kidney
15	chr7:65542200-65564600	Weak transcription	NH-A	brain
16	chr7:65542200-65564800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:65542400-65564400	Weak transcription	Hela-S3	cervix
18	chr7:65542800-65560600	Strong transcription	Fetal Stomach	stomach
19	chr7:65543000-65564600	Weak transcription	NHDF-Ad	bronchial
20	chr7:65543200-65564400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr7:65543400-65558600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:65543400-65558600	Weak transcription	Small Intestine	intestine
23	chr7:65543400-65559200	Strong transcription	Fetal Intestine Large	intestine
24	chr7:65543600-65561400	Strong transcription	Fetal Intestine Small	intestine
25	chr7:65545600-65558200	Strong transcription	Lung	lung
26	chr7:65546200-65560600	Strong transcription	Liver	Liver
27	chr7:65546400-65559000	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr7:65548000-65564600	Weak transcription	GM12878-XiMat	blood
29	chr7:65548200-65564600	Weak transcription	Brain Substantia Nigra	brain
30	chr7:65548200-65564800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr7:65549000-65564600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr7:65549200-65564600	Weak transcription	K562	blood
33	chr7:65549200-65564600	Weak transcription	NHEK	skin
34	chr7:65549400-65556600	Weak transcription	Brain Hippocampus Middle	brain
35	chr7:65549400-65558600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr7:65549400-65564600	Weak transcription	Primary B cells from peripheral blood	blood
37	chr7:65550200-65564400	Weak transcription	Right Atrium	heart
38	chr7:65550600-65564600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:65551600-65564800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr7:65551600-65564800	Weak transcription	Primary T cells from cord blood	blood
41	chr7:65551600-65564800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr7:65552000-65564400	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr7:65552000-65564600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:65552000-65564600	Weak transcription	Fetal Lung	lung
45	chr7:65552200-65556800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr7:65552200-65564400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr7:65552200-65564600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr7:65552200-65564600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr7:65552200-65564600	Weak transcription	Brain Anterior Caudate	brain
50	chr7:65552200-65564600	Weak transcription	A549	lung

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