Variant report

Variant	rs160648
Chromosome Location	chr7:65543384-65543385
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:65542891..65544540-chr7:65545958..65548122,2	MCF-7	breast:
2	chr7:65542751..65544261-chr7:65552638..65554259,2	K562	blood:
3	chr7:65540644..65542722-chr7:65542987..65544900,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249319	Chromatin interaction
ENSG00000126522	Chromatin interaction

Extended variants
information (count: 211 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:206)

rs_ID	r²[population]
rs1039664	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1061361	0.91[CEU][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10807699	0.82[AMR][1000 genomes]
rs10807701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1134256	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11538349	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1167613	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1177514	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12698508	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12698509	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12698511	0.85[ASN][1000 genomes]
rs13226598	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13233662	0.81[EUR][1000 genomes]
rs13236109	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs13247184	0.81[EUR][1000 genomes]
rs13308751	0.89[AMR][1000 genomes]
rs1499613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs1499614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs160543	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs160637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs160638	0.91[AMR][1000 genomes]
rs160639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs160642	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs160643	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs160644	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs160646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs160649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs160651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs160652	1.00[CEU][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs160653	0.96[ASN][1000 genomes]
rs160655	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs160656	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs160657	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1626926	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1701745	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1701750	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1701758	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1701759	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1715235	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1723265	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1723266	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1723267	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1723269	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1723270	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1723272	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs182600	0.91[AMR][1000 genomes]
rs186378	0.91[AMR][1000 genomes]
rs188765	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1964692	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1979823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs2177703	0.81[ASN][1000 genomes]
rs2243480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes]
rs2257790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs2420171	0.84[AMR][1000 genomes]
rs2420172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs2456483	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2460422	0.87[AMR][1000 genomes]
rs2460425	0.87[AMR][1000 genomes]
rs2460426	0.87[AMR][1000 genomes]
rs2460431	0.87[AMR][1000 genomes]
rs2462569	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2465120	0.87[AMR][1000 genomes]
rs2637561	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2658583	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2949697	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2961102	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3105600	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs313798	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs313799	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs313800	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs313801	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs313802	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs313803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs313807	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs313808	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs313809	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs313813	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs313814	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs313819	0.91[AMR][1000 genomes]
rs313820	0.91[AMR][1000 genomes]
rs313822	0.91[AMR][1000 genomes]
rs313824	0.91[AMR][1000 genomes]
rs313831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs313832	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs313833	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs316304	0.87[AMR][1000 genomes]
rs316307	0.91[AMR][1000 genomes]
rs316313	0.91[AMR][1000 genomes]
rs316314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs316315	0.84[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes]
rs316317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs316318	0.87[AMR][1000 genomes]
rs316321	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes]
rs316322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs316325	0.87[AMR][1000 genomes]
rs316326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs316327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes]
rs316329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes]
rs316331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes]
rs316332	0.82[AMR][1000 genomes]
rs316333	0.84[AMR][1000 genomes]
rs316334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs34032527	0.91[AMR][1000 genomes]
rs34136756	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs34193460	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34529418	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34560516	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34577383	0.81[ASN][1000 genomes]
rs34628538	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34637256	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs34804747	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34933526	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs34970380	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35046236	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35087093	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35257008	0.81[EUR][1000 genomes]
rs35260440	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35268390	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35283677	0.81[EUR][1000 genomes]
rs35310401	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs35391607	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap]
rs35396113	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35421653	0.81[EUR][1000 genomes]
rs35432774	0.81[ASN][1000 genomes]
rs35480979	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap]
rs35542501	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35679560	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35689884	0.81[EUR][1000 genomes]
rs35820085	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36004293	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36033484	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36068983	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36084489	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36127118	0.86[AMR][1000 genomes]
rs383402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs387676	0.87[AMR][1000 genomes]
rs392355	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs402418	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs403089	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4145008	0.80[AMR][1000 genomes]
rs419603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes]
rs422164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs423187	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs427044	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs431076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs431168	0.88[ASN][1000 genomes]
rs431318	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs437889	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs448377	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs451396	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs458291	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs462853	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs465359	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs466983	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718309	0.87[AMR][1000 genomes]
rs55700941	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55876148	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55886244	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55895244	0.81[ASN][1000 genomes]
rs56016656	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56133509	0.81[EUR][1000 genomes]
rs56171161	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56291018	0.81[EUR][1000 genomes]
rs56955188	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56985706	0.81[ASN][1000 genomes]
rs57057549	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57126451	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58207111	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58330502	0.81[ASN][1000 genomes]
rs59794892	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59966766	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6460274	0.87[AMR][1000 genomes]
rs67728539	0.81[ASN][1000 genomes]
rs68189316	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6949812	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs6964245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs6966322	0.80[AMR][1000 genomes]
rs6970243	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs6974723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes]
rs709607	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73136349	0.87[AMR][1000 genomes]
rs73142137	0.81[EUR][1000 genomes]
rs73142162	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73142166	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73148097	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73150014	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73150016	0.83[ASN][1000 genomes]
rs7778911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs7787230	0.87[AMR][1000 genomes]
rs7794661	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs7795242	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs780453	0.91[AMR][1000 genomes]
rs7806717	0.81[ASN][1000 genomes]
rs781141	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs781142	0.91[CHB][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs781149	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs781150	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs781153	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs781154	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs781155	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs781156	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs781157	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs906134	0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs937108	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs958550	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes]
rs9769882	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv888325	chr7:65474919-65575893	Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1021186	chr7:65492601-65663438	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv984546	chr7:65531382-65556631	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs160648	RP4-756H11.3	cis	Skin Sun Exposed Lower leg	GTEx
rs160648	ZNF117	cis	parietal	SCAN
rs160648	CRCP	cis	parietal	SCAN
rs160648	VKORC1L1	cis	Whole Blood	GTEx
rs160648	GUSB	cis	Whole Blood	GTEx
rs160648	RP4-756H11.3	cis	lung	GTEx
rs160648	CRCP	cis	cerebellum	SCAN
rs160648	ASL	cis	cerebellum	SCAN
rs160648	ASL	Cis_1M	lymphoblastoid	RTeQTL
rs160648	ASL	cis	multi-tissue	Pritchard
rs160648	ZNF117	cis	cerebellum	SCAN
rs160648	ZNF273	cis	parietal	SCAN
rs160648	VKORC1L1	cis	parietal	SCAN

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65541600-65543400	Enhancers	Spleen	Spleen
2	chr7:65541600-65549600	Weak transcription	Thymus	Thymus
3	chr7:65541600-65565000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:65541800-65546600	Weak transcription	Primary T cells from cord blood	blood
5	chr7:65541800-65551000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:65541800-65554200	Weak transcription	HSMMtube	muscle
7	chr7:65541800-65556800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:65541800-65564600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:65541800-65564600	Weak transcription	Fetal Brain Female	brain
10	chr7:65541800-65564800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr7:65542000-65543600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:65542000-65543600	Enhancers	Right Ventricle	heart
13	chr7:65542000-65543600	Enhancers	GM12878-XiMat	blood
14	chr7:65542000-65544200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:65542000-65545600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr7:65542000-65546000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:65542000-65546600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:65542000-65546600	Weak transcription	Fetal Muscle Leg	muscle
19	chr7:65542000-65546800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:65542000-65546800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:65542000-65546800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:65542000-65546800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr7:65542000-65546800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr7:65542000-65547200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:65542000-65547200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:65542000-65547200	Weak transcription	Brain Substantia Nigra	brain
27	chr7:65542000-65547800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr7:65542000-65547800	Weak transcription	Fetal Lung	lung
29	chr7:65542000-65550800	Weak transcription	Brain Germinal Matrix	brain
30	chr7:65542000-65552000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr7:65542000-65553400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr7:65542000-65553600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr7:65542000-65554400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:65542000-65559600	Weak transcription	Psoas Muscle	Psoas
35	chr7:65542000-65564600	Weak transcription	Primary B cells from cord blood	blood
36	chr7:65542000-65564800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr7:65542000-65564800	Weak transcription	Aorta	Aorta
38	chr7:65542000-65564800	Weak transcription	HSMM	muscle
39	chr7:65542200-65543400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr7:65542200-65543400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:65542200-65543600	Enhancers	Pancreas	Pancrea
42	chr7:65542200-65545600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr7:65542200-65545800	Weak transcription	Brain Hippocampus Middle	brain
44	chr7:65542200-65546400	Weak transcription	Brain Anterior Caudate	brain
45	chr7:65542200-65546600	Weak transcription	A549	lung
46	chr7:65542200-65546800	Weak transcription	NHEK	skin
47	chr7:65542200-65546800	Weak transcription	NHLF	lung
48	chr7:65542200-65547200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr7:65542200-65547200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr7:65542200-65547400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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