Variant report

Variant	rs73150016
Chromosome Location	chr7:65451458-65451459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:65419413..65421834-chr7:65450885..65452622,2	K562	blood:

Extended variants
information (count: 172 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs1039664	1.00[ASN][1000 genomes]
rs1061361	1.00[ASN][1000 genomes]
rs1134256	1.00[ASN][1000 genomes]
rs11538349	1.00[ASN][1000 genomes]
rs1167613	0.98[ASN][1000 genomes]
rs1177514	1.00[ASN][1000 genomes]
rs12698508	1.00[ASN][1000 genomes]
rs12698509	1.00[ASN][1000 genomes]
rs12698511	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13220979	0.86[ASN][1000 genomes]
rs13226598	1.00[ASN][1000 genomes]
rs13228133	0.89[ASN][1000 genomes]
rs13233662	0.92[ASN][1000 genomes]
rs13236109	0.92[ASN][1000 genomes]
rs13246608	0.89[ASN][1000 genomes]
rs13247184	0.93[ASN][1000 genomes]
rs160543	0.83[ASN][1000 genomes]
rs160642	0.83[ASN][1000 genomes]
rs160643	0.83[ASN][1000 genomes]
rs160644	0.83[ASN][1000 genomes]
rs160646	0.83[ASN][1000 genomes]
rs160648	0.83[ASN][1000 genomes]
rs160649	0.81[ASN][1000 genomes]
rs160653	0.86[ASN][1000 genomes]
rs160655	0.86[ASN][1000 genomes]
rs160656	0.83[ASN][1000 genomes]
rs160657	0.83[ASN][1000 genomes]
rs1626926	1.00[ASN][1000 genomes]
rs1701745	0.98[ASN][1000 genomes]
rs1701750	0.98[ASN][1000 genomes]
rs1701758	0.98[ASN][1000 genomes]
rs1701759	0.98[ASN][1000 genomes]
rs1715235	0.98[ASN][1000 genomes]
rs1723265	0.94[ASN][1000 genomes]
rs1723266	0.98[ASN][1000 genomes]
rs1723267	0.98[ASN][1000 genomes]
rs1723269	0.98[ASN][1000 genomes]
rs1723270	0.98[ASN][1000 genomes]
rs1723272	0.98[ASN][1000 genomes]
rs188765	0.96[ASN][1000 genomes]
rs1964692	1.00[ASN][1000 genomes]
rs2177703	0.98[ASN][1000 genomes]
rs2456483	0.98[ASN][1000 genomes]
rs2462569	0.98[ASN][1000 genomes]
rs2658583	0.98[ASN][1000 genomes]
rs2949697	0.98[ASN][1000 genomes]
rs2961102	1.00[ASN][1000 genomes]
rs3105600	1.00[ASN][1000 genomes]
rs313798	0.98[ASN][1000 genomes]
rs313799	0.98[ASN][1000 genomes]
rs313800	0.95[ASN][1000 genomes]
rs313801	0.87[ASN][1000 genomes]
rs313802	0.87[ASN][1000 genomes]
rs313803	0.87[ASN][1000 genomes]
rs313806	0.93[EUR][1000 genomes]
rs313807	0.96[ASN][1000 genomes]
rs313808	0.96[ASN][1000 genomes]
rs313809	0.96[ASN][1000 genomes]
rs313813	0.91[ASN][1000 genomes]
rs313814	0.93[ASN][1000 genomes]
rs313831	0.83[ASN][1000 genomes]
rs313832	0.83[ASN][1000 genomes]
rs313833	0.83[ASN][1000 genomes]
rs34136756	0.98[ASN][1000 genomes]
rs34193460	0.98[ASN][1000 genomes]
rs34529418	1.00[ASN][1000 genomes]
rs34560516	1.00[ASN][1000 genomes]
rs34577383	0.98[ASN][1000 genomes]
rs34586068	0.95[ASN][1000 genomes]
rs34628538	0.95[ASN][1000 genomes]
rs34637256	0.93[ASN][1000 genomes]
rs34804747	1.00[ASN][1000 genomes]
rs34933526	0.98[ASN][1000 genomes]
rs34970380	1.00[ASN][1000 genomes]
rs34974928	0.93[ASN][1000 genomes]
rs34983797	0.96[ASN][1000 genomes]
rs35046236	1.00[ASN][1000 genomes]
rs35058610	0.96[ASN][1000 genomes]
rs35087093	1.00[ASN][1000 genomes]
rs35257008	0.92[ASN][1000 genomes]
rs35260440	0.99[ASN][1000 genomes]
rs35268390	1.00[ASN][1000 genomes]
rs35268411	0.82[ASN][1000 genomes]
rs35283677	0.93[ASN][1000 genomes]
rs35310401	0.98[ASN][1000 genomes]
rs35391607	0.93[ASN][1000 genomes]
rs35396113	0.98[ASN][1000 genomes]
rs35421653	0.93[ASN][1000 genomes]
rs35432774	0.98[ASN][1000 genomes]
rs35480979	0.93[ASN][1000 genomes]
rs35542501	1.00[ASN][1000 genomes]
rs35663341	0.92[ASN][1000 genomes]
rs35679560	0.98[ASN][1000 genomes]
rs35689884	0.93[ASN][1000 genomes]
rs35820085	0.99[ASN][1000 genomes]
rs36004293	1.00[ASN][1000 genomes]
rs36033484	0.98[ASN][1000 genomes]
rs36068983	1.00[ASN][1000 genomes]
rs36084489	1.00[ASN][1000 genomes]
rs392355	0.98[ASN][1000 genomes]
rs402418	0.93[ASN][1000 genomes]
rs403089	0.87[ASN][1000 genomes]
rs423187	0.90[ASN][1000 genomes]
rs427044	0.93[ASN][1000 genomes]
rs431168	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs431318	0.92[ASN][1000 genomes]
rs437889	0.93[ASN][1000 genomes]
rs448377	0.98[ASN][1000 genomes]
rs451396	0.98[ASN][1000 genomes]
rs458291	0.85[ASN][1000 genomes]
rs462853	0.83[ASN][1000 genomes]
rs465359	0.83[ASN][1000 genomes]
rs466983	0.87[ASN][1000 genomes]
rs55700941	0.98[ASN][1000 genomes]
rs55876148	0.98[ASN][1000 genomes]
rs55886244	1.00[ASN][1000 genomes]
rs55895244	0.98[ASN][1000 genomes]
rs55909123	0.91[ASN][1000 genomes]
rs56016656	0.98[ASN][1000 genomes]
rs56133509	0.92[ASN][1000 genomes]
rs56171161	0.98[ASN][1000 genomes]
rs56291018	0.96[ASN][1000 genomes]
rs56955188	0.98[ASN][1000 genomes]
rs56985706	0.98[ASN][1000 genomes]
rs57057549	1.00[ASN][1000 genomes]
rs57126451	1.00[ASN][1000 genomes]
rs58062456	0.93[ASN][1000 genomes]
rs58207111	0.98[ASN][1000 genomes]
rs58330502	0.98[ASN][1000 genomes]
rs59794892	1.00[ASN][1000 genomes]
rs59820001	0.96[ASN][1000 genomes]
rs59966766	0.98[ASN][1000 genomes]
rs60683927	0.96[ASN][1000 genomes]
rs67728539	0.98[ASN][1000 genomes]
rs68189316	1.00[ASN][1000 genomes]
rs6949812	0.95[ASN][1000 genomes]
rs6970243	0.98[ASN][1000 genomes]
rs709607	1.00[ASN][1000 genomes]
rs71564939	0.93[ASN][1000 genomes]
rs73142122	0.80[ASN][1000 genomes]
rs73142137	0.88[ASN][1000 genomes]
rs73142162	0.98[ASN][1000 genomes]
rs73142166	0.98[ASN][1000 genomes]
rs73148097	1.00[ASN][1000 genomes]
rs73150014	1.00[ASN][1000 genomes]
rs7794661	0.98[ASN][1000 genomes]
rs7795242	0.98[ASN][1000 genomes]
rs7806717	0.98[ASN][1000 genomes]
rs781141	1.00[ASN][1000 genomes]
rs781142	1.00[ASN][1000 genomes]
rs781149	0.98[ASN][1000 genomes]
rs781150	0.98[ASN][1000 genomes]
rs781153	0.98[ASN][1000 genomes]
rs781154	0.98[ASN][1000 genomes]
rs781155	0.95[ASN][1000 genomes]
rs781156	0.98[ASN][1000 genomes]
rs781157	0.98[ASN][1000 genomes]
rs906134	1.00[ASN][1000 genomes]
rs937108	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv1025494	chr7:65402301-65515606	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv538906	chr7:65402301-65515606	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv9823	chr7:65413362-65468020	Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
6	esv3426468	chr7:65413488-65462982	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	esv3433491	chr7:65414034-65463477	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	nsv1028971	chr7:65414064-65457437	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	nsv888322	chr7:65415647-65466565	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
10	nsv538907	chr7:65417400-65456089	Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
11	nsv888323	chr7:65418355-65461080	ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
12	nsv888324	chr7:65418876-65466565	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
13	nsv967489	chr7:65445874-65469129	Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs73150016	GUSB	cis	Whole Blood	GTEx
rs73150016	VKORC1L1	cis	Whole Blood	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65448200-65452800	Weak transcription	K562	blood
2	chr7:65449200-65480400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:65449600-65451800	Weak transcription	HepG2	liver
4	chr7:65449600-65453200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links