Variant report
| Variant | rs1607142 |
|---|---|
| Chromosome Location | chr8:69309001-69309002 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10098538 | 0.83[ASN][1000 genomes] |
| rs10099008 | 0.83[ASN][1000 genomes] |
| rs10101369 | 0.88[ASN][1000 genomes] |
| rs1092884 | 0.85[ASN][1000 genomes] |
| rs13272720 | 0.91[ASN][1000 genomes] |
| rs1517119 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1517120 | 0.95[ASN][1000 genomes] |
| rs1517126 | 0.92[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1589055 | 0.95[ASN][1000 genomes] |
| rs1607143 | 0.95[ASN][1000 genomes] |
| rs1880535 | 0.85[ASN][1000 genomes] |
| rs1914328 | 0.90[ASN][1000 genomes] |
| rs2037680 | 0.81[ASN][1000 genomes] |
| rs2048891 | 0.95[ASN][1000 genomes] |
| rs2048892 | 0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2090421 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2243693 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2263127 | 0.95[ASN][1000 genomes] |
| rs2591018 | 0.91[ASN][1000 genomes] |
| rs2676658 | 0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2692026 | 0.85[ASN][1000 genomes] |
| rs7004646 | 0.81[ASN][1000 genomes] |
| rs814438 | 0.83[ASN][1000 genomes] |
| rs814443 | 0.85[ASN][1000 genomes] |
| rs814449 | 0.84[ASN][1000 genomes] |
| rs814450 | 0.84[ASN][1000 genomes] |
| rs814451 | 0.84[ASN][1000 genomes] |
| rs814452 | 0.81[ASN][1000 genomes] |
| rs814453 | 0.80[ASN][1000 genomes] |
| rs814462 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948687 | chr8:69041121-69642540 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031040 | chr8:69265471-69315554 | Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv508512 | chr8:69268794-69324532 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv1023810 | chr8:69308665-69440129 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv539644 | chr8:69308665-69440129 | Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:69308200-69312200 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
