Variant report

Variant	rs10099008
Chromosome Location	chr8:69238380-69238381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr8:69237147-69238545	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
C8orf34	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10098538	1.00[ASN][1000 genomes]
rs10101369	0.92[ASN][1000 genomes]
rs1092884	0.94[ASN][1000 genomes]
rs13272720	0.88[ASN][1000 genomes]
rs1517119	0.83[ASN][1000 genomes]
rs1517120	0.83[ASN][1000 genomes]
rs1517126	0.89[ASN][1000 genomes]
rs1589055	0.83[ASN][1000 genomes]
rs1607142	0.83[ASN][1000 genomes]
rs1607143	0.83[ASN][1000 genomes]
rs1807806	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1880535	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1914328	0.89[ASN][1000 genomes]
rs2037680	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2048891	0.83[ASN][1000 genomes]
rs2048892	0.83[ASN][1000 genomes]
rs2090421	0.83[ASN][1000 genomes]
rs2243693	0.90[ASN][1000 genomes]
rs2263127	0.83[ASN][1000 genomes]
rs2591018	0.90[ASN][1000 genomes]
rs2676643	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2676658	0.88[ASN][1000 genomes]
rs2692026	0.94[ASN][1000 genomes]
rs7004646	0.97[ASN][1000 genomes]
rs814438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs814441	0.85[EUR][1000 genomes]
rs814443	0.95[ASN][1000 genomes]
rs814449	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs814450	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs814451	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs814452	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs814453	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs814462	0.93[ASN][1000 genomes]
rs814464	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv890979	chr8:69176154-69252417	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv890980	chr8:69181681-69252417	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69237800-69240400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:69238000-69240400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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