Variant report

Variant	rs814443
Chromosome Location	chr8:69264288-69264289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10098538	0.87[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs10099008	0.95[ASN][1000 genomes]
rs10101369	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1092884	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13262740	0.89[JPT][hapmap]
rs13272720	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1517119	0.86[ASN][1000 genomes]
rs1517120	0.86[ASN][1000 genomes]
rs1517124	0.81[JPT][hapmap]
rs1517126	0.86[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs1589055	0.86[ASN][1000 genomes]
rs1607142	0.85[ASN][1000 genomes]
rs1607143	0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs1607144	0.84[JPT][hapmap]
rs1807806	0.91[ASN][1000 genomes]
rs1880535	0.89[CEU][hapmap];0.87[CHB][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1914328	0.92[CEU][hapmap];0.86[CHB][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2037680	0.94[ASN][1000 genomes]
rs2048891	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2048892	0.86[ASN][1000 genomes]
rs2090421	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2138677	0.81[CHD][hapmap];0.86[JPT][hapmap]
rs2176368	0.86[JPT][hapmap]
rs2243693	0.87[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs2263127	0.86[ASN][1000 genomes]
rs2591013	0.82[JPT][hapmap]
rs2591018	0.87[CHB][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs2676658	0.87[CHB][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.92[ASN][1000 genomes]
rs2692026	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2692027	0.86[CHB][hapmap];0.81[GIH][hapmap]
rs6472395	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs7004646	0.92[ASN][1000 genomes]
rs7015549	0.84[JPT][hapmap]
rs7017437	0.86[JPT][hapmap]
rs7823116	0.86[JPT][hapmap]
rs7829425	0.87[CHB][hapmap];0.81[GIH][hapmap]
rs814438	0.87[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs814441	0.85[CEU][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs814444	0.92[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs814446	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs814449	0.87[CHB][hapmap];0.86[JPT][hapmap];0.97[ASN][1000 genomes]
rs814450	0.87[CHB][hapmap];0.82[JPT][hapmap];0.97[ASN][1000 genomes]
rs814451	0.87[CHB][hapmap];0.85[JPT][hapmap];0.97[ASN][1000 genomes]
rs814452	0.94[ASN][1000 genomes]
rs814453	0.92[ASN][1000 genomes]
rs814462	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs814463	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs814464	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69264000-69265200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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