Variant report

Variant	rs13262740
Chromosome Location	chr8:69271236-69271237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10098538	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10957432	0.82[ASN][1000 genomes]
rs13251356	0.91[EUR][1000 genomes]
rs13252745	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13257807	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13261104	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13276394	0.96[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap]
rs13278793	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1517124	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs1607144	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1971404	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1971527	0.91[CHB][hapmap];0.89[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2138677	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs2176368	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2249536	0.82[JPT][hapmap]
rs2591011	0.92[ASN][1000 genomes]
rs2591012	0.92[ASN][1000 genomes]
rs2591015	0.89[ASN][1000 genomes]
rs2591016	0.92[ASN][1000 genomes]
rs4346979	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6472395	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs6991818	0.96[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7000384	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7001418	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7004646	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7013597	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7015549	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7017437	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7818147	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7822588	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7823116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7823422	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7838935	0.89[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs814441	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs814443	0.89[JPT][hapmap]
rs814444	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs814446	0.84[JPT][hapmap]
rs814463	0.97[ASN][1000 genomes]
rs868546	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9298133	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1031040	chr8:69265471-69315554	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv508512	chr8:69268794-69324532	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13262740	C8orf34	cis	Nerve Tibial	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69270800-69273400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:69270800-69291600	Weak transcription	Aorta	Aorta
3	chr8:69271200-69272400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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