Variant report

Variant	rs7838935
Chromosome Location	chr8:69295584-69295585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10098538	0.85[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.83[EUR][1000 genomes]
rs13252745	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13257807	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13261104	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13262740	0.89[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13276394	0.85[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap]
rs13278793	0.83[EUR][1000 genomes]
rs1517124	0.95[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap];0.94[ASN][1000 genomes]
rs1607144	0.94[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs1971404	0.89[CEU][hapmap];0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs1971527	0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs2138677	0.85[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.81[YRI][hapmap]
rs2176368	0.85[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs2591011	0.90[ASN][1000 genomes]
rs2591012	0.90[ASN][1000 genomes]
rs2591015	0.87[ASN][1000 genomes]
rs2591016	0.90[ASN][1000 genomes]
rs4346979	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6472395	0.89[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.81[YRI][hapmap]
rs6991818	0.85[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.84[EUR][1000 genomes]
rs7000384	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7001418	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7004646	0.81[EUR][1000 genomes]
rs7013597	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7015549	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7017437	0.81[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.80[YRI][hapmap]
rs7818147	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7822588	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7823116	0.89[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7823422	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs814441	0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs814444	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs814463	0.94[ASN][1000 genomes]
rs868546	0.89[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.84[EUR][1000 genomes]
rs9298133	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1031040	chr8:69265471-69315554	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv508512	chr8:69268794-69324532	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7838935	RPS20	trans	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69290800-69295600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:69292200-69295800	Weak transcription	Aorta	Aorta

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