Variant report

Variant	rs814441
Chromosome Location	chr8:69268470-69268471
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10099008	0.85[EUR][1000 genomes]
rs10101369	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs1092884	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs10957432	0.81[ASN][1000 genomes]
rs13252745	0.92[ASN][1000 genomes]
rs13257807	0.96[ASN][1000 genomes]
rs13261104	0.98[ASN][1000 genomes]
rs13262740	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs13272720	0.82[CEU][hapmap];0.91[GIH][hapmap];0.83[EUR][1000 genomes]
rs13276394	0.91[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap]
rs13278793	0.87[ASN][1000 genomes]
rs1517124	1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs1607143	0.82[CEU][hapmap]
rs1607144	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1807806	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs1880535	0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1914328	0.91[GIH][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs1971404	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs1971527	0.91[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2037680	0.83[EUR][1000 genomes]
rs2138677	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2176368	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2249556	0.84[GIH][hapmap]
rs2591011	0.81[CEU][hapmap];0.92[ASN][1000 genomes]
rs2591012	0.92[ASN][1000 genomes]
rs2591015	0.89[ASN][1000 genomes]
rs2591016	0.91[ASN][1000 genomes]
rs2591018	0.89[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.83[EUR][1000 genomes]
rs2676643	0.80[EUR][1000 genomes]
rs2692026	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs2692027	0.89[CEU][hapmap];0.82[GIH][hapmap]
rs4346979	0.92[ASN][1000 genomes]
rs6991818	0.91[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs7000384	0.96[ASN][1000 genomes]
rs7001418	0.95[ASN][1000 genomes]
rs7009736	0.82[GIH][hapmap]
rs7013597	0.95[ASN][1000 genomes]
rs7013706	0.82[GIH][hapmap]
rs7015549	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7017437	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7818147	0.96[ASN][1000 genomes]
rs7822588	0.96[ASN][1000 genomes]
rs7823116	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7823422	0.99[ASN][1000 genomes]
rs7829425	0.89[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap]
rs7838935	0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs814438	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs814443	0.85[CEU][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs814444	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs814446	0.92[CEU][hapmap];0.85[JPT][hapmap]
rs814449	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs814450	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs814451	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs814452	0.83[EUR][1000 genomes]
rs814453	0.83[EUR][1000 genomes]
rs814462	0.85[CEU][hapmap];0.95[GIH][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs814463	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs868546	0.91[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs9298133	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1031040	chr8:69265471-69315554	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69268000-69270600	Weak transcription	NHLF	lung
2	chr8:69268200-69270400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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