Variant report

Variant	rs814446
Chromosome Location	chr8:69255815-69255816
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10098538	0.83[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs10099008	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10101369	0.84[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1092884	0.84[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs13262740	0.84[JPT][hapmap]
rs13272720	0.83[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1517119	0.86[ASN][1000 genomes]
rs1517120	0.86[ASN][1000 genomes]
rs1517124	0.80[JPT][hapmap]
rs1517126	0.83[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1589055	0.86[ASN][1000 genomes]
rs1607142	0.85[ASN][1000 genomes]
rs1607143	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1607144	0.80[CHB][hapmap]
rs1807806	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1880535	0.89[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1914328	0.83[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2037680	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2048891	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2048892	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs2090421	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2138677	0.85[JPT][hapmap]
rs2176368	0.82[JPT][hapmap]
rs2243693	0.84[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2263127	0.86[ASN][1000 genomes]
rs2591013	0.95[JPT][hapmap]
rs2591018	0.82[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2676643	0.93[EUR][1000 genomes]
rs2676658	0.83[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2692026	0.84[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs2692027	0.96[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap]
rs6472395	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs6991818	0.81[JPT][hapmap]
rs7004646	0.94[ASN][1000 genomes]
rs7017437	0.82[JPT][hapmap]
rs7823116	0.85[JPT][hapmap]
rs7829425	0.96[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs814438	0.96[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs814441	0.92[CEU][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs814443	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs814444	0.82[JPT][hapmap]
rs814449	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs814450	0.96[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs814451	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs814452	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs814453	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs814462	0.83[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs814464	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs868546	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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