Variant report

Variant	rs2676643
Chromosome Location	chr8:69221116-69221117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10098538	0.93[CHD][hapmap];0.83[JPT][hapmap]
rs10099008	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10101369	0.83[JPT][hapmap]
rs1092884	0.83[JPT][hapmap]
rs13272720	0.89[CHD][hapmap];0.83[JPT][hapmap]
rs1517126	0.83[JPT][hapmap]
rs1607143	0.86[JPT][hapmap]
rs1807806	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1880535	0.85[CEU][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs1914328	0.89[CHD][hapmap];0.83[JPT][hapmap]
rs2037680	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2048891	0.83[JPT][hapmap]
rs2090421	0.83[JPT][hapmap]
rs2243693	0.83[JPT][hapmap]
rs2591013	0.83[JPT][hapmap]
rs2591018	0.87[CHD][hapmap];0.83[JPT][hapmap]
rs2676658	0.87[CHD][hapmap];0.83[JPT][hapmap]
rs2692026	0.83[JPT][hapmap]
rs2692027	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap]
rs6472395	0.93[CHD][hapmap];0.83[JPT][hapmap]
rs7829425	1.00[CEU][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap]
rs814438	1.00[CEU][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs814441	0.89[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs814446	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs814449	0.96[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs814450	0.92[CEU][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes]
rs814451	0.96[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs814452	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs814453	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs814462	0.93[CHD][hapmap];0.83[JPT][hapmap]
rs814464	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv890977	chr8:69173049-69236718	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv890978	chr8:69176154-69236718	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv890979	chr8:69176154-69252417	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv890980	chr8:69181681-69252417	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69219800-69221600	Weak transcription	Pancreas	Pancrea

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