Variant report

Variant	rs2048892
Chromosome Location	chr8:69318344-69318345
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10098538	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs10099008	0.83[ASN][1000 genomes]
rs10101369	0.91[JPT][hapmap];0.84[YRI][hapmap];0.90[ASN][1000 genomes]
rs1092884	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs13272720	0.91[JPT][hapmap];0.85[YRI][hapmap];0.93[ASN][1000 genomes]
rs1400552	0.80[ASN][1000 genomes]
rs1517119	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1517120	1.00[ASN][1000 genomes]
rs1517126	0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1589055	1.00[ASN][1000 genomes]
rs1607142	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1607143	0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[ASN][1000 genomes]
rs1880535	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs1914328	0.91[JPT][hapmap];0.84[YRI][hapmap];0.92[ASN][1000 genomes]
rs2037680	0.82[ASN][1000 genomes]
rs2048891	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[ASN][1000 genomes]
rs2090421	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2243693	0.84[CEU][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2249556	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs2263127	1.00[ASN][1000 genomes]
rs2591013	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs2591018	0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs2676658	0.87[ASW][hapmap];0.84[CEU][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.91[MKK][hapmap];0.92[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2692026	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs2692027	0.86[JPT][hapmap]
rs6472395	0.91[JPT][hapmap]
rs7004646	0.81[ASN][1000 genomes]
rs7009736	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs7013706	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs7829425	0.87[JPT][hapmap]
rs814438	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs814443	0.86[ASN][1000 genomes]
rs814446	0.86[JPT][hapmap]
rs814449	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs814450	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs814451	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs814452	0.82[ASN][1000 genomes]
rs814453	0.81[ASN][1000 genomes]
rs814462	0.91[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv508512	chr8:69268794-69324532	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1023810	chr8:69308665-69440129	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv539644	chr8:69308665-69440129	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69317200-69342600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links