Variant report
| Variant | rs2591015 |
|---|---|
| Chromosome Location | chr8:69320432-69320433 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs13252745 | 0.97[ASN][1000 genomes] |
| rs13257807 | 0.92[ASN][1000 genomes] |
| rs13261104 | 0.88[ASN][1000 genomes] |
| rs13262740 | 0.89[ASN][1000 genomes] |
| rs1517120 | 0.88[EUR][1000 genomes] |
| rs1517124 | 0.94[ASN][1000 genomes] |
| rs1589055 | 0.83[EUR][1000 genomes] |
| rs1607143 | 0.86[EUR][1000 genomes] |
| rs1607144 | 0.94[ASN][1000 genomes] |
| rs2048891 | 0.84[EUR][1000 genomes] |
| rs2263127 | 0.85[EUR][1000 genomes] |
| rs2591011 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2591012 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2591016 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2591018 | 0.80[EUR][1000 genomes] |
| rs4346979 | 0.97[ASN][1000 genomes] |
| rs7000384 | 0.92[ASN][1000 genomes] |
| rs7001418 | 0.94[ASN][1000 genomes] |
| rs7013597 | 0.94[ASN][1000 genomes] |
| rs7015549 | 0.94[ASN][1000 genomes] |
| rs7818147 | 0.85[ASN][1000 genomes] |
| rs7822588 | 0.85[ASN][1000 genomes] |
| rs7823116 | 0.89[ASN][1000 genomes] |
| rs7823422 | 0.87[ASN][1000 genomes] |
| rs7838935 | 0.87[ASN][1000 genomes] |
| rs814441 | 0.89[ASN][1000 genomes] |
| rs814463 | 0.92[ASN][1000 genomes] |
| rs9298133 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948687 | chr8:69041121-69642540 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv508512 | chr8:69268794-69324532 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1023810 | chr8:69308665-69440129 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv539644 | chr8:69308665-69440129 | Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:69317200-69342600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
