Variant report

Variant	rs1621520
Chromosome Location	chr15:57264737-57264738
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57210716..57212486-chr15:57263351..57264921,2	K562	blood:
2	chr15:57263359..57266200-chr15:57266241..57268315,2	K562	blood:
3	chr15:57262336..57264742-chr15:57265375..57267744,2	K562	blood:
4	chr15:57253721..57256073-chr15:57262899..57264820,2	K562	blood:
5	chr15:57208964..57210715-chr15:57261991..57264737,2	K562	blood:

Variant related genes	Relation type
ENSG00000137871	Chromatin interaction
ENSG00000140262	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1642934	1.00[AFR][1000 genomes]
rs1647375	1.00[AFR][1000 genomes]
rs1647393	1.00[AFR][1000 genomes]
rs1657931	1.00[AFR][1000 genomes]
rs1660947	1.00[AFR][1000 genomes]
rs1660949	1.00[AFR][1000 genomes]
rs169892	1.00[AFR][1000 genomes]
rs2414483	1.00[AFR][1000 genomes]
rs933765	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv904250	chr15:57225766-57294085	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57256200-57265200	Weak transcription	Fetal Brain Male	brain
2	chr15:57256200-57265800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:57256400-57265200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr15:57256800-57277200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:57257200-57274600	Weak transcription	Adipose Nuclei	Adipose
6	chr15:57257800-57265400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr15:57259400-57268200	Enhancers	HepG2	liver
8	chr15:57260000-57272200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:57260000-57272400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr15:57260600-57267000	Enhancers	Dnd41	blood
11	chr15:57261000-57269400	Weak transcription	Psoas Muscle	Psoas
12	chr15:57261200-57264800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr15:57261200-57272800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr15:57261200-57279000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:57261400-57265400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:57261400-57272000	Weak transcription	Colon Smooth Muscle	Colon
17	chr15:57261400-57275000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr15:57262000-57269400	Weak transcription	Ovary	ovary
19	chr15:57262000-57269600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:57262200-57264800	Weak transcription	Fetal Lung	lung
21	chr15:57262200-57266000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr15:57262200-57270800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:57262200-57280000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:57262400-57266000	Weak transcription	Liver	Liver
25	chr15:57263000-57266200	Enhancers	Small Intestine	intestine
26	chr15:57263200-57266600	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr15:57263400-57265000	Enhancers	Stomach Mucosa	stomach
28	chr15:57263400-57266200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr15:57263400-57266200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:57263400-57266400	Enhancers	K562	blood
31	chr15:57263600-57264800	Enhancers	Duodenum Mucosa	Duodenum
32	chr15:57263600-57265000	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr15:57263600-57265000	Enhancers	Brain Angular Gyrus	brain
34	chr15:57263600-57265000	Enhancers	Brain Germinal Matrix	brain
35	chr15:57263600-57265000	Enhancers	Osteobl	bone
36	chr15:57263600-57265800	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr15:57263600-57266200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr15:57263600-57266200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr15:57263600-57266200	Enhancers	Brain Cingulate Gyrus	brain
40	chr15:57263600-57266200	Enhancers	Brain Hippocampus Middle	brain
41	chr15:57263600-57266400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:57263600-57266400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:57263600-57268200	Enhancers	Brain Substantia Nigra	brain
44	chr15:57263800-57264800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:57263800-57266600	Enhancers	Fetal Heart	heart
46	chr15:57263800-57267000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr15:57263800-57267600	Enhancers	A549	lung
48	chr15:57263800-57271000	Weak transcription	Hela-S3	cervix
49	chr15:57263800-57272400	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr15:57263800-57276000	Weak transcription	Lung	lung

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