Variant report

Variant	rs933765
Chromosome Location	chr15:57064839-57064840
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57061117..57063691-chr15:57064747..57067595,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12904421	1.00[AFR][1000 genomes]
rs1621520	1.00[AFR][1000 genomes]
rs1642934	1.00[AFR][1000 genomes]
rs1647375	1.00[AFR][1000 genomes]
rs1647393	1.00[AFR][1000 genomes]
rs1657931	1.00[AFR][1000 genomes]
rs1660947	1.00[AFR][1000 genomes]
rs1660949	1.00[AFR][1000 genomes]
rs169892	1.00[AFR][1000 genomes]
rs2414483	1.00[AFR][1000 genomes]
rs7162654	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57053200-57065200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:57056800-57066400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr15:57057800-57065000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:57057800-57065000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:57057800-57065000	Weak transcription	Osteobl	bone
6	chr15:57058000-57065000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:57058000-57065000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:57058000-57065200	Weak transcription	Ovary	ovary
9	chr15:57058000-57066400	Weak transcription	Thymus	Thymus
10	chr15:57059800-57065200	Weak transcription	K562	blood
11	chr15:57059800-57065200	Weak transcription	NH-A	brain
12	chr15:57062800-57065000	Weak transcription	Adipose Nuclei	Adipose
13	chr15:57062800-57065200	Weak transcription	Liver	Liver
14	chr15:57063400-57068000	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr15:57064600-57065000	Enhancers	HepG2	liver
16	chr15:57064800-57065000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:57064800-57065200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr15:57064800-57065400	Enhancers	H1 Cell Line	embryonic stem cell
19	chr15:57064800-57065400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr15:57064800-57065400	Enhancers	HSMMtube	muscle
21	chr15:57064800-57065600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr15:57064800-57065800	Enhancers	H9 Cell Line	embryonic stem cell
23	chr15:57064800-57065800	Weak transcription	HUVEC	blood vessel
24	chr15:57064800-57066000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:57064800-57066000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr15:57064800-57066000	Enhancers	Fetal Lung	lung
27	chr15:57064800-57066000	Enhancers	Sigmoid Colon	Sigmoid Colon

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