Variant report

Variant	rs1647375
Chromosome Location	chr15:57163047-57163048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12904421	1.00[AFR][1000 genomes]
rs1621520	1.00[AFR][1000 genomes]
rs1642934	1.00[AFR][1000 genomes]
rs1647393	1.00[AFR][1000 genomes]
rs1657931	1.00[AFR][1000 genomes]
rs1660947	1.00[AFR][1000 genomes]
rs1660949	1.00[AFR][1000 genomes]
rs169892	1.00[AFR][1000 genomes]
rs2414483	1.00[AFR][1000 genomes]
rs7162654	1.00[AFR][1000 genomes]
rs933765	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	esv3401951	chr15:57151709-57176189	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57135400-57164000	Weak transcription	Aorta	Aorta
2	chr15:57140000-57164600	Weak transcription	Pancreas	Pancrea
3	chr15:57154200-57163400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:57159600-57163200	Weak transcription	NH-A	brain
5	chr15:57159800-57163800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr15:57160800-57163400	Weak transcription	Colon Smooth Muscle	Colon
7	chr15:57160800-57164000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:57162000-57163600	Weak transcription	Brain Substantia Nigra	brain
9	chr15:57162200-57163400	Weak transcription	Brain Anterior Caudate	brain
10	chr15:57162200-57163400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:57162200-57178400	Weak transcription	Thymus	Thymus
12	chr15:57162600-57163200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:57162800-57164400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:57163000-57163200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:57163000-57163800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:57163000-57164800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr15:57163000-57164800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr15:57163000-57164800	Enhancers	Hela-S3	cervix
19	chr15:57163000-57164800	Enhancers	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links